User: blrhgeruser1

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blrhgeruser140
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1 year, 7 months ago
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Posts by blrhgeruser1

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Comment: C: Read binary Illumina GTC files (1000 genomes)
... Please see my answer about the open-source Python GTC file parsing library from Illumina: https://github.com/Illumina/BeadArrayFiles ...
written 20 months ago by blrhgeruser140
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Answer: A: Automate Illumina GenomeStudio With Python Script
... Not exactly automating GenomeStudio, but what you could do is turn on AutoConvert on the iScan instrument and have it generate gtc files for each sample in your experiment. Then you can use the recently published open-source Python gtc file parser from Illumina to write a script for generating repor ...
written 20 months ago by blrhgeruser140
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Answer: A: Read binary Illumina GTC files (1000 genomes)
... Illumina has published an open-source file parser for GTC files on GitHub: https://github.com/Illumina/BeadArrayFiles Included are the file format specification and an example script that lets you generate final report files as you would normally do with GenomeStudio. ...
written 20 months ago by blrhgeruser140
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What training dataset was used for the NCBI Glimmer web server?
... I am trying to recreate the results from NCBI's web server for Glimmer: http://www.ncbi.nlm.nih.gov/genomes/MICROBES/glimmer_3.cgi However, I don't see any information on what training datasets they used and what options are being passed to Glimmer, other than that selecting a linear topology proba ...
ncbi gene finding glimmer written 3.8 years ago by blrhgeruser140 • updated 2.9 years ago by Michael Dondrup44k
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Characterizing Bacterial Or Viral Outbreaks With Wgs And Building Phylogenetic Trees?
... After reading some articles regarding the use of NGS to sequence bacterial whole-genomes for characterizing outbreaks, I have become interested in building a pipeline for streamlining this workflow as a pet project. Basically, at a very high-level I would like to take whole-genome sequence data for ...
phylogeny written 4.6 years ago by blrhgeruser140

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Popular Question 3.4 years ago, created a question with more than 1,000 views. For Characterizing Bacterial Or Viral Outbreaks With Wgs And Building Phylogenetic Trees?

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