Moderator: Sej Modha

gravatar for Sej Modha
Sej Modha4.2k
Reputation:
4,240
Status:
Trusted
Location:
Glasgow, UK
Twitter:
SejModha
Last seen:
20 hours ago
Joined:
5 years, 7 months ago
Email:
s*******@gmail.com

Posts by Sej Modha

<prev • 661 results • page 1 of 67 • next >
0
votes
0
answers
98
views
0
answers
Comment: C: Working with redundant information on BLAST output
... It would be easier to use `groupby` in your dataframe and then sort by column of interest. Also see https://pandas.pydata.org/pandas-docs/stable/user_guide/groupby.html and https://stackoverflow.com/questions/27474921/compare-two-columns-using-pandas for comparing column values in pandas. ...
written 1 day ago by Sej Modha4.2k
0
votes
1
answer
52
views
1
answers
Comment: C: Download All The Bacterial Genomes (previous versions) From NCBI ftp
... Just out of interest, why would you want to download older versions of the assemblies? Do you want to download older versions of the assemblies for a specific bacterial species or all bacterial assemblies available on the NCBI? ...
written 1 day ago by Sej Modha4.2k
0
votes
0
answers
56
views
0
answers
Comment: C: perseus expert assist
... Hey BabySteps, I'd suggest that you read https://www.biostars.org/p/357878/ as it will help you formulate better questions and more informative posts on this platform. ...
written 1 day ago by Sej Modha4.2k
0
votes
1
answer
76
views
1
answers
Comment: C: Looking for the best plot for overlapping features
... There may be a way to deal with this in the excel spreadsheet but I doubt if anyone on this platform may be able to help you with that. I'd suggest importing this spreadsheet in either `R` or python `pandas` dataframe to perform exploratory analysis. PS: It is not clear what is the question you ar ...
written 2 days ago by Sej Modha4.2k
2
votes
0
answers
98
views
0
answers
Comment: C: Working with redundant information on BLAST output
... The easiest way is to use `pandas` library in python for such tabular data. Once the data is in a dataframe format, it would be easier for you to group, filter and aggregate this data. There are a range of pandas tutorials, blogs and worked examples available that would help you with this. ...
written 2 days ago by Sej Modha4.2k
0
votes
1
answer
75
views
1
answers
Comment: C: Coverage of exome
... Please change the type of the post to `Question` from `Tutorial`. Additionally, have a read through https://www.biostars.org/p/357878/ This may help as a starting point: https://www.biostars.org/p/5165/ ...
written 4 days ago by Sej Modha4.2k
0
votes
0
answers
104
views
0
answers
Comment: C: SPAdes error code -6
... Did you try to assemble the sample2 with spades `--meta` and does that give the same error? More info about the error itself can be found on https://github.com/ablab/spades/issues/297 . It is related to the coverage specific issue in a given sample. You could try to use the `--only-assemble` inste ...
written 10 days ago by Sej Modha4.2k
0
votes
0
answers
76
views
0
answers
Comment: C: Online NGS Training Program
... Hi suvarna, As Wouter suggested in your previous [post][1], please do not post the same content multiple times on this platform and refrain from using emojis in your post. Please note that you may be suspended from this platform if you repeat this behavior. Thanks Sej [1]: https://www.biost ...
written 15 days ago by Sej Modha4.2k
0
votes
2
answers
956
views
2
answers
Comment: C: How to convert SBML or BioPAX format into KGML (KEGG) format
... Please do not post additional comments related to the question as answers. The answer field is reserved for solutions for the original question. Do not expect people to "tell" or "give" you the answer to a specific question. Please read https://www.biostars.org/p/357878/ for more info about how to ...
written 16 days ago by Sej Modha4.2k
0
votes
0
answers
119
views
0
answers
Comment: C: how to extract node interactions by Netpathminer
... https://www.biostars.org/p/357878/ ...
written 16 days ago by Sej Modha4.2k

Latest awards to Sej Modha

Scholar 12 weeks ago, created an answer that has been accepted. For A: Convert GTF file into GFF3 file
Popular Question 3 months ago, created a question with more than 1,000 views. For NCBI Protein GI to Genome Accession
Appreciated 4 months ago, created a post with more than 5 votes. For A: NCBI Protein GI to Genome Accession
Teacher 5 months ago, created an answer with at least 3 up-votes. For A: NCBI Protein GI to Genome Accession
Scholar 5 months ago, created an answer that has been accepted. For A: Convert GTF file into GFF3 file
Teacher 5 months ago, created an answer with at least 3 up-votes. For A: NCBI Protein GI to Genome Accession
Scholar 9 months ago, created an answer that has been accepted. For A: Convert GTF file into GFF3 file
Teacher 9 months ago, created an answer with at least 3 up-votes. For A: NCBI Protein GI to Genome Accession
Teacher 10 months ago, created an answer with at least 3 up-votes. For A: NCBI Protein GI to Genome Accession
Scholar 10 months ago, created an answer that has been accepted. For A: Convert GTF file into GFF3 file
Scholar 10 months ago, created an answer that has been accepted. For A: Convert GTF file into GFF3 file
Scholar 11 months ago, created an answer that has been accepted. For A: Convert GTF file into GFF3 file
Scholar 11 months ago, created an answer that has been accepted. For A: Convert GTF file into GFF3 file
Teacher 11 months ago, created an answer with at least 3 up-votes. For A: NCBI Protein GI to Genome Accession
Teacher 12 months ago, created an answer with at least 3 up-votes. For A: NCBI Protein GI to Genome Accession
Commentator 12 months ago, created a comment with at least 3 up-votes. For C: Help with ggtree tip labeling in R
Commentator 12 months ago, created a comment with at least 3 up-votes. For C: Help with ggtree tip labeling in R
Scholar 13 months ago, created an answer that has been accepted. For A: Convert GTF file into GFF3 file
Teacher 13 months ago, created an answer with at least 3 up-votes. For A: NCBI Protein GI to Genome Accession
Teacher 13 months ago, created an answer with at least 3 up-votes. For A: NCBI Protein GI to Genome Accession
Scholar 13 months ago, created an answer that has been accepted. For A: Convert GTF file into GFF3 file
Popular Question 14 months ago, created a question with more than 1,000 views. For metaViC: Virus metagenomics pipeline for unknown host or in absence of a host genome
Teacher 14 months ago, created an answer with at least 3 up-votes. For A: NCBI Protein GI to Genome Accession
Appreciated 15 months ago, created a post with more than 5 votes. For A: NCBI Protein GI to Genome Accession
Scholar 16 months ago, created an answer that has been accepted. For A: Convert GTF file into GFF3 file

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 616 users visited in the last hour