Moderator: Sej Modha

gravatar for Sej Modha
Sej Modha4.0k
Reputation:
3,970
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Location:
Glasgow, UK
Twitter:
SejModha
Last seen:
1 day, 7 hours ago
Joined:
5 years, 1 month ago
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s*******@gmail.com

Posts by Sej Modha

<prev • 628 results • page 1 of 63 • next >
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Comment: C: when you prep DNA at stool, Were you also so?
... Hello koreanraichu! We believe that this post does not fit the main topic of this site. Not a bioinformatic question. Please post it on Seqanswers.com instead. For this reason we have closed your question. This allows us to keep the site focused on the topics that the community can help with. ...
written 10 days ago by Sej Modha4.0k
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Comment: C: when you prep DNA at stool, Were you also so?
... Please post your question on [Seqanswers][1] as you're likely to receive helpful suggestions from SA community. [1]: http://seqanswers.com/ ...
written 10 days ago by Sej Modha4.0k
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Comment: C: Need help with sequence similarity networks programmes
... Hi There, I have never used any of these programs before, however, the error for `fusedTriplets.py` states that it needs the BLAST output headers in the file. You could try to run `blastp` with `-outfmt 7` as it should include the header line for hits. ...
written 11 days ago by Sej Modha4.0k
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Comment: C: abacas assembly contig to chromosome
... You could try and use other scaffolding tools such as [SSPACE][1]. [1]: https://www.baseclear.com/services/bioinformatics/basetools/sspace-standard/ ...
written 12 days ago by Sej Modha4.0k
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Comment: C: i need help with Sequence similarity networks programmes?
... Please provide more information about the problem you're facing here by including details about sample input file(s), type of computer system you're working on etc and please spare a few minutes to read https://www.biostars.org/p/75548/ ...
written 12 days ago by Sej Modha4.0k
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Comment: C: How to run Bracken on windows?
... You could either install [Linux bash shell on Windows][1] or use tools like [Cygwin][2] to run this program on Windows. [1]: https://www.howtogeek.com/249966/how-to-install-and-use-the-linux-bash-shell-on-windows-10/ [2]: https://www.cygwin.com/ ...
written 12 days ago by Sej Modha4.0k
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Comment: C: Viral de-novo Variant Call
... If you want to figure out the location of the mutations then a) check how similar/different your assembled genome is compared to the published genome b) you could also run basic synteny analysis between the genomes to identify major coordinate differences between these genomes. ...
written 22 days ago by Sej Modha4.0k
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Comment: C: merge data, R .excel
... Please do not post additional information about the question as an answer. The answer field is reserved for an actual/potential solution that may help resolve the question. Also refer to: https://www.biostars.org/p/75548/ ...
written 26 days ago by Sej Modha4.0k
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Comment: C: Profile Hidden Markov Models
... Hi @[ashishbansal12300][1], It is not good practice to copy and paste answers from papers to this forum. If you think that a paper (e.g. [here][2] is the link to the paper you have posted the above text from), a website or another post answers the question then please refer to the original source o ...
written 26 days ago by Sej Modha4.0k
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Answer: C: Error during Spades Meta-assembly: err code: -9
... It has been reported as a RAM related issue on the [SPAdes github page][1], try and specify RAM with `--memory` option and see if that helps. [1]: https://github.com/ablab/spades/issues/7 ...
written 29 days ago by Sej Modha4.0k

Latest awards to Sej Modha

Teacher 3 months ago, created an answer with at least 3 up-votes. For A: NCBI Protein GI to Genome Accession
Scholar 3 months ago, created an answer that has been accepted. For A: Convert GTF file into GFF3 file
Scholar 4 months ago, created an answer that has been accepted. For A: Convert GTF file into GFF3 file
Teacher 4 months ago, created an answer with at least 3 up-votes. For A: NCBI Protein GI to Genome Accession
Scholar 4 months ago, created an answer that has been accepted. For A: Convert GTF file into GFF3 file
Scholar 5 months ago, created an answer that has been accepted. For A: Convert GTF file into GFF3 file
Scholar 5 months ago, created an answer that has been accepted. For A: Convert GTF file into GFF3 file
Teacher 5 months ago, created an answer with at least 3 up-votes. For A: NCBI Protein GI to Genome Accession
Teacher 6 months ago, created an answer with at least 3 up-votes. For A: NCBI Protein GI to Genome Accession
Commentator 6 months ago, created a comment with at least 3 up-votes. For C: Help with ggtree tip labeling in R
Commentator 6 months ago, created a comment with at least 3 up-votes. For C: Help with ggtree tip labeling in R
Scholar 6 months ago, created an answer that has been accepted. For A: Convert GTF file into GFF3 file
Teacher 6 months ago, created an answer with at least 3 up-votes. For A: NCBI Protein GI to Genome Accession
Teacher 7 months ago, created an answer with at least 3 up-votes. For A: NCBI Protein GI to Genome Accession
Scholar 7 months ago, created an answer that has been accepted. For A: Convert GTF file into GFF3 file
Teacher 8 months ago, created an answer with at least 3 up-votes. For A: NCBI Protein GI to Genome Accession
Appreciated 9 months ago, created a post with more than 5 votes. For A: NCBI Protein GI to Genome Accession
Scholar 10 months ago, created an answer that has been accepted. For A: Convert GTF file into GFF3 file
Teacher 10 months ago, created an answer with at least 3 up-votes. For A: NCBI Protein GI to Genome Accession
Teacher 10 months ago, created an answer with at least 3 up-votes. For A: NCBI Protein GI to Genome Accession
Teacher 10 months ago, created an answer with at least 3 up-votes. For A: NCBI Protein GI to Genome Accession
Appreciated 10 months ago, created a post with more than 5 votes. For A: NCBI Protein GI to Genome Accession
Scholar 11 months ago, created an answer that has been accepted. For A: Convert GTF file into GFF3 file
Teacher 11 months ago, created an answer with at least 3 up-votes. For A: NCBI Protein GI to Genome Accession

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