Moderator: Sej Modha

gravatar for Sej Modha
Sej Modha4.6k
Reputation:
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Location:
Glasgow, UK
Twitter:
SejModha
Last seen:
2 weeks, 5 days ago
Joined:
6 years, 2 months ago
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Posts by Sej Modha

<prev • 696 results • page 1 of 70 • next >
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Comment: C: DAVID multiple input
... You could potentially concatenate all files into a file and submit that as one input? PS: https://www.biostars.org/p/357878/ ...
written 6 weeks ago by Sej Modha4.6k
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Comment: C: segmentation fault (core dumped) For Stringtie
... https://www.biostars.org/p/357878/ ...
written 12 weeks ago by Sej Modha4.6k
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Comment: C: Mauve program will not open
... It is difficult to help without any information related to the operating system, java version you're trying to run the program with and version of the mauve you're trying to use. https://www.biostars.org/p/357878/ ...
written 3 months ago by Sej Modha4.6k
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Comment: C: ORF finder v0.4.1
... Is there any specific reason why you'd like to use an older version of this tool? ...
written 3 months ago by Sej Modha4.6k
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Comment: C: Where to find .ace format description
... There is some explanation about the ACE file format on here: https://web.archive.org/web/20100609072313/http://bcr.musc.edu/manuals/CONSED.txt ...
written 3 months ago by Sej Modha4.6k
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Comment: C: Retrieving sequence from NCBI
... Can you share an example of what sorta data you have? Do you have gene names or NCBI gene ids? ...
written 4 months ago by Sej Modha4.6k
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Comment: C: Genome size estimation using Kmergenie
... You could find out by reading Kmergenie [paper][1] [1]: https://academic.oup.com/bioinformatics/article/30/1/31/235479 ...
written 4 months ago by Sej Modha4.6k
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Comment: C: problem with missing input file in snakemake rule
... I am not sure why you need `rule all` for in this case as you are saving the output from each `bam` file to a single file. ...
written 4 months ago by Sej Modha4.6k
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Comment: C: Crystal structure of lambda phage?
... Did you try searching the [PDB][1] database? [1]: https://www.rcsb.org/ ...
written 4 months ago by Sej Modha4.6k
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Answer: C: problem with missing input file in snakemake rule
... My guess is that the only output that can be found from rule `map_star_SE` is a `bam` file as you have specified. If you are saving a `*.out.tab` as part of that rule then you'd have to explicitly specify that in the rule `map_star_SE` output section. ...
written 4 months ago by Sej Modha4.6k

Latest awards to Sej Modha

Commentator 3 months ago, created a comment with at least 3 up-votes. For C: Help with ggtree tip labeling in R
Scholar 3 months ago, created an answer that has been accepted. For A: Convert GTF file into GFF3 file
Scholar 4 months ago, created an answer that has been accepted. For A: Convert GTF file into GFF3 file
Teacher 4 months ago, created an answer with at least 3 up-votes. For A: NCBI Protein GI to Genome Accession
Teacher 5 months ago, created an answer with at least 3 up-votes. For A: NCBI Protein GI to Genome Accession
Scholar 6 months ago, created an answer that has been accepted. For A: Convert GTF file into GFF3 file
Scholar 10 months ago, created an answer that has been accepted. For A: Convert GTF file into GFF3 file
Popular Question 10 months ago, created a question with more than 1,000 views. For NCBI Protein GI to Genome Accession
Appreciated 11 months ago, created a post with more than 5 votes. For A: NCBI Protein GI to Genome Accession
Teacher 12 months ago, created an answer with at least 3 up-votes. For A: NCBI Protein GI to Genome Accession
Scholar 12 months ago, created an answer that has been accepted. For A: Convert GTF file into GFF3 file
Teacher 12 months ago, created an answer with at least 3 up-votes. For A: NCBI Protein GI to Genome Accession
Teacher 16 months ago, created an answer with at least 3 up-votes. For A: NCBI Protein GI to Genome Accession
Scholar 16 months ago, created an answer that has been accepted. For A: Convert GTF file into GFF3 file
Scholar 17 months ago, created an answer that has been accepted. For A: Convert GTF file into GFF3 file
Teacher 17 months ago, created an answer with at least 3 up-votes. For A: NCBI Protein GI to Genome Accession
Scholar 17 months ago, created an answer that has been accepted. For A: Convert GTF file into GFF3 file
Scholar 18 months ago, created an answer that has been accepted. For A: Convert GTF file into GFF3 file
Scholar 18 months ago, created an answer that has been accepted. For A: Convert GTF file into GFF3 file
Teacher 18 months ago, created an answer with at least 3 up-votes. For A: NCBI Protein GI to Genome Accession
Teacher 19 months ago, created an answer with at least 3 up-votes. For A: NCBI Protein GI to Genome Accession
Commentator 19 months ago, created a comment with at least 3 up-votes. For C: Help with ggtree tip labeling in R
Commentator 19 months ago, created a comment with at least 3 up-votes. For C: Help with ggtree tip labeling in R
Teacher 20 months ago, created an answer with at least 3 up-votes. For A: NCBI Protein GI to Genome Accession
Scholar 20 months ago, created an answer that has been accepted. For A: Convert GTF file into GFF3 file

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