User: biostart

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biostart280
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280
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Trusted
Location:
Germany
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1 month ago
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5 years, 2 months ago
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Posts by biostart

<prev • 94 results • page 1 of 10 • next >
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Comment: C: Problem mapping paired-end Illumina reads
... kmer content: ![k-mers][1] [1]: http://i65.tinypic.com/zlzzvq.png ...
written 5 weeks ago by biostart280
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Comment: C: Problem mapping paired-end Illumina reads
... ![GC content][1] [1]: http://i67.tinypic.com/105tb7k.png ...
written 5 weeks ago by biostart280
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Comment: C: Problem mapping paired-end Illumina reads
... ![per base sequence content][2] [2]: http://i66.tinypic.com/k35g1l.png ...
written 5 weeks ago by biostart280
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Comment: C: Problem mapping paired-end Illumina reads
... FastQC reports for both read 1 and 2 for the problematic samples look similarly problematic, I am posting the images below. Any idea how to correct this? ![FastQC quality score] [2] [2]: http://i67.tinypic.com/25k0itd.png ...
written 5 weeks ago by biostart280
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Comment: C: Problem mapping paired-end Illumina reads
... I can estimate the average DNA fragment length as ~150 based on the reads which successfully aligned ...
written 5 weeks ago by biostart280
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Comment: C: Problem mapping paired-end Illumina reads
... The numbers of reads is the same, but their quality seems to be different: I have mapped with Bowtie separately each of the two paired fastq files: for one file I've got 50% reads with at least one reported alignment, whereas for the second fastq file I've got 31% reads with at least one reported al ...
written 5 weeks ago by biostart280
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Comment: C: Problem mapping paired-end Illumina reads
... I tried changing to "-X 1000", but it did not help ...
written 5 weeks ago by biostart280
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Answer: A: Associating DNA methylation and nucleosome occupancy with AS events
... You can use for this either NucTools (https://homeveg.github.io/nuctools/) or HOMER (http://homer.ucsd.edu/homer/). ...
written 5 weeks ago by biostart280
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Answer: A: Confusion of TF-gene interactions database
... You can try http://chip-atlas.org/ ...
written 5 weeks ago by biostart280
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Answer: A: Is GC-bias correction valid for MeDIP-seq data preprocessing?
... MeDIP enriches for high-CpG regions by the design of this method. So if you have in mind a GC correction as in ChIP-seq, then no, it would not be applicable to MeDIP. ...
written 5 weeks ago by biostart280

Latest awards to biostart

Popular Question 3 months ago, created a question with more than 1,000 views. For [solved] Bowtie mapping paired-end reads of different length
Popular Question 6 months ago, created a question with more than 1,000 views. For [solved] Bowtie mapping paired-end reads of different length
Popular Question 6 months ago, created a question with more than 1,000 views. For bedtools closest (output file format)
Popular Question 6 months ago, created a question with more than 1,000 views. For Gene Ontology without enrichment analysis
Popular Question 6 months ago, created a question with more than 1,000 views. For BedTools can't find "hg19.genome"
Appreciated 21 months ago, created a post with more than 5 votes. For GO analysis: DAVID vs GREAT vs GOrilla
Great Question 21 months ago, created a question with more than 5,000 views. For GO analysis: DAVID vs GREAT vs GOrilla
Good Question 21 months ago, asked a question that was upvoted at least 5 times. For GO analysis: DAVID vs GREAT vs GOrilla
Popular Question 21 months ago, created a question with more than 1,000 views. For [solved] Bowtie mapping paired-end reads of different length
Popular Question 21 months ago, created a question with more than 1,000 views. For bedtools closest (output file format)
Popular Question 21 months ago, created a question with more than 1,000 views. For Gene Ontology without enrichment analysis
Popular Question 21 months ago, created a question with more than 1,000 views. For BedTools can't find "hg19.genome"
Popular Question 21 months ago, created a question with more than 1,000 views. For Merging many BAM files [solved]
Popular Question 21 months ago, created a question with more than 1,000 views. For Splice site coordinates: where to get them?
Popular Question 21 months ago, created a question with more than 1,000 views. For Is it typical to find a ~30 bp motif enriched in promoters of ~20 related genes?
Teacher 21 months ago, created an answer with at least 3 up-votes. For A: how to get TF binding affinity from ENCODE narrowPeak or broadPeak files?
Popular Question 23 months ago, created a question with more than 1,000 views. For Merging many BAM files [solved]
Supporter 2.4 years ago, voted at least 25 times.
Popular Question 2.7 years ago, created a question with more than 1,000 views. For Is it typical to find a ~30 bp motif enriched in promoters of ~20 related genes?
Popular Question 2.7 years ago, created a question with more than 1,000 views. For GO analysis: DAVID vs GREAT vs GOrilla
Student 2.8 years ago, asked a question with at least 3 up-votes. For GO analysis: DAVID vs GREAT vs GOrilla
Scholar 3.0 years ago, created an answer that has been accepted. For A: Assigning Histone modification to TSSs based on Chip-seq
Scholar 4.2 years ago, created an answer that has been accepted. For A: Assigning Histone modification to TSSs based on Chip-seq

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