User: Farah
Farah • 70
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Posts by Farah
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... Hello,
I was wondering if you could advise me in my following questions:
From a bait-prey pull-down experiment, I have an initial interaction network of 400 proteins from String database. Then, initially, to retrieve my bait protein and its highly associated proteins from this network, I selected ...
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... Hello,
I have a network of 100 proteins (without any quantitative or expression data) which I want to do clustering based on their Gene Ontology biological process inside the network to create some subnetworks of my initial network. In such a way that nodes to be coloured based on their cluster, an ...
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... Ok. Thank you very much. ...
written 12 months ago by
Farah • 70
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... Hello,
I have a list of 2000 proteins from an MS experiment. All of these proteins have accession IDs (Uniprot IDs). I would like to know, from this list of proteins, how I can identify novel proteins and those proteins which are not annotated so far (in any protein databases).
I would highly appr ...
written 12 months ago by
Farah • 70
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... Hello,
I am trying to make a bar polar chart for spindle orientation in a quarter circle shape. My data has two columns, "Angle" and "Percentage". I used plotly package in R and the below codes to make it:
library("plotly")
p <- plot_ly(
type = 'barpolar',
r = c(54.7, 32.6, ...
written 12 months ago by
Farah • 70
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... Thank you very much dear xanderpico, and so sorry for my late response as I did not receive any emails or notifications regarding the answer to my question. Many thanks for your guide and help. Best wishes, ...
written 13 months ago by
Farah • 70
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... Hello,
I am trying to make a polar plot/chart that goes 90 degrees (from 0 to 90 degree) instead of 360 using ggplot2. I need to visualise my data (angle and frequency) similar to these quarter circle polar plots ![Figure1][1]
I ran the below codes, however, It is still a 360 degree circle polar p ...
written 13 months ago by
Farah • 70
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... That is great. Thanks a lot for your guide. ...
written 14 months ago by
Farah • 70
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... Hello,
From an Immunoprecipitation/MS (pull down) analysis from mouse cells, I have a list of Accession IDs (such as P10809, P63261, Q09666, ...). I need to discover protein-protein interactions among all of these identified proteins and also specifically interactions with my bait protein (protein ...
written 14 months ago by
Farah • 70
• updated
14 months ago by
andrew.j.skelton73 ♦ 6.1k
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... Hello,
After importing the proteins interactions output of String database, which is an TSV file, into Cytoscape, I used Gradient1 Node Style for my network, because I needed to have nodes in 3D style similar to Stringdb style (with both black shadow and white specular highlight over nodes). But, I ...
written 14 months ago by
Farah • 70
• updated
13 months ago by
xanderpico • 330
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