User: biostar

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biostar150
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Posts by biostar

<prev • 26 results • page 1 of 3 • next >
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Comment: C: How Do You Find The Available Number Of Insect And Metazoan Genomes?
... Thank you so much! ...
written 5.1 years ago by biostar150
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How Do You Find The Available Number Of Insect And Metazoan Genomes?
... Sorry if you find this question silly enough to be annoying. I have been looking for a reliable source(of course NCBI) to find the total number of published genomes of insecta and metazoans. I tried NCBI and found 731 genomes of insects indicated (not so clearly mentioned) there. I need the number ...
genome protein written 5.1 years ago by biostar150 • updated 5.1 years ago by Pierre Lindenbaum120k
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How Can I Find Utr Regions Of This Gene?
... Hi everyone, I have this gene (Accession: XM_968180.1) from NCBI and I need its 5' UTR and 3' UTR regions. Could any of you help me figure out the way to retrieve those regions from NCBI? Thank you for your help. ...
gene utr written 5.2 years ago by biostar150
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Comment: C: Any Free Software Similar To Sequencher?
... Thanks I will try this. ...
written 5.3 years ago by biostar150
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Any Free Software Similar To Sequencher?
... Hi Guys I need to align the contigs and genomic sequences and see the polymorphism. Is there any free software similar to sequencher that I can use. ...
alignment written 5.3 years ago by biostar150 • updated 8 weeks ago by Antonio R. Franco4.0k
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Is There A Perl Script To Select Longest Sequence Region(Translated) Between Stop Codons Translated Using Transeq?
... Hi Everyone, I am trying to figure out the easiest way to extract the longest sequence from a translated frame of DNA sequences. The sequences I have were translated using transeq, now I need to extract the region with the longest gap between two stop codons (as indicated by * in the sequence below. ...
perl translation written 5.3 years ago by biostar150 • updated 5.3 years ago by Kenosis1.2k
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Comment: C: How Do I Align More Than Five Long Dna Scaffolds (Contigs) To The Reference Gene
... Found this tool on NCBI, where I can input reference sequence and target sequences (Multiple) and gives nice result of pairwise alignment (local): http://blast.ncbi.nlm.nih.gov/Blast.cgi?PAGE_TYPE=BlastSearch&BLAST_SPEC=blast2seq&LINK_LOC=align2seq ...
written 5.3 years ago by biostar150
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Comment: C: How Do I Align More Than Five Long Dna Scaffolds (Contigs) To The Reference Gene
... Thank you Zev, but this program somehow generates error on installation.. ...
written 5.3 years ago by biostar150
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Comment: C: How Do I Align More Than Five Long Dna Scaffolds (Contigs) To The Reference Gene
... Thanks Pavel! I already tried this, but I also need to show the alignment of all sequences locally. I might need to do it manually using SeAl.. ...
written 5.3 years ago by biostar150
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Answer: A: How To Bulk Retrieve Dna Fasta Given Gene Uids?
... If you have stand-alone BLAST in your computer then you can do it easily using the following command.. blastdbcmd -db database_name -dbtype nucl/proc -entry_batch file_with_uid.txt ...
written 5.3 years ago by biostar150

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