User: blanca

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blanca10
Reputation:
10
Status:
New User
Location:
Spain
Last seen:
2 years ago
Joined:
5 years, 3 months ago
Email:
b**********@gmail.com

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Posts by blanca

<prev • 9 results • page 1 of 1 • next >
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blastdbcmd vs blastdb_aliastool for custom database
... From my understanding, both tools blastdbcmd and blastdb_aliastool would allow the user to subset a database from GI numbers of a bunch of sequences using them as follows: > blastdbcmd -db nr -entry_batch human.gi -target_only -out human.txt > blastdb_aliastool -gilist human.gi -db nr ...
blast written 2.5 years ago by blanca10
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Answer: A: Restricting ncbi nr database: from accession numbers to database. Problem with b
... It seems to be solved in this other post: https://www.biostars.org/p/141674/ ...
written 2.5 years ago by blanca10
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Answer: A: Are old versions of NCBI's nr stored somewhere?
... In case someone else needs the old nr version (with gi numbers), I have found it here: http://www.matrixscience.com/help/seq_db_setup_nr_gi.html ...
written 2.5 years ago by blanca10
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Comment: C: Restricting ncbi nr database: from accession numbers to database. Problem with b
... Hi Janne, Have you solved this issue? ...
written 2.5 years ago by blanca10
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Answer: A: Velvetg error coverage=0
... So... Any idea, guys? ...
written 4.3 years ago by blanca10
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Answer: A: Can I Compile Velvet For K-Mer Of 201?
... upendrakumar.devisetty, how did you finally compile velvet with k-mer 201? I may be making the same mistake ... ...
written 4.3 years ago by blanca10
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Answer: A: Velvet can't handle k-mers as long as X! We'll stick to 32 if you don't mind.
... I am sorry I still have not clear how to compile Velvet with a longer K-mer. Either changing the MAXKMERLENGTH option in Makefile and compiling with "make" afterwards or changing that option with make MAXKMERLENGTH=57 (with or without quotes) don't seem to work (still showing the error "Velvet can't ...
written 4.3 years ago by blanca10
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Answer: A: Distance Matrix For Metagenomes
... Thank you, it seems I need to carefully rethink my aproach. I would try unifrac and compareads! ...
written 5.3 years ago by blanca10
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Distance Matrix For Metagenomes
... Hi, I would like to compare metagenomes and I have though about making a distance matrix. What I am not quite sure is if it would be a goog idea to create it based on a blast (old blastall function). In that case, it shouldn't be any differences between considering one or another as the database, ...
matrix written 5.3 years ago by blanca10 • updated 6 months ago by Biostar ♦♦ 20

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