User: Lluís R.

gravatar for Lluís R.
Lluís R.380
Reputation:
380
Status:
Trusted
Location:
Spain, Barcelona
Website:
http://b101nfo.blogspo...
Twitter:
Lluis_Rev
Scholar ID:
Google Scholar Page
Last seen:
18 minutes ago
Joined:
3 years, 2 months ago
Email:
l************@gmail.com

I am interested nowadays in microarrays, refSEQ and genome annotation, GO. But my goal are to maximize the useful information of each existing experiment. Now I am commiting with Biopython, and GoogleGenomics, you can follow some of my thought in my blog, or in twitter.

Posts by Lluís R.

<prev • 102 results • page 1 of 11 • next >
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Comment: C: StackExchange/Area51 bioinformatics is back
... The down votes never say "go away" to the user but to the question. But it might discourage a bit posting. That's why I think Facebook dislike wasn't introduced until much recently. ...
written 4 days ago by Lluís R.380
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Answer: A: StackExchange/Area51 bioinformatics is back
... When Bioconductor opened its own [support.bioconductor][1] forking Biostars I don't recall any post about diluting the user base. That said, the reason of Biostars being separated from StackExchange [was the license][3]. And StackExchange has made efforts to provide guidance about the license of t ...
written 4 days ago by Lluís R.380
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Comment: C: GVSA: problem with gene identifier
... the genelist_mic is a vector, a list or a GeneSetCollection? Altough the problem might be in mclapp not exporting the right namespace to the different sockets. ...
written 5 days ago by Lluís R.380
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Comment: C: GO tools using evidence code
... I found a tool, see my answer. ...
written 6 days ago by Lluís R.380
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Answer: A: GO tools using evidence code
... I found one tool capable of taking into account the evidence code but not the relation code. However it is not longer maintained: IntelliGO: [Benabderrahmane, Sidahmed, et al. "IntelliGO: a new vector-based semantic similarity measure including annotation origin." BMC bioinformatics 11.1 (2010): 58 ...
written 6 days ago by Lluís R.380
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Comment: C: GVSA: problem with gene identifier
... Where do you receive this messages? What does the `traceback()` function says? Have you searched in the support of Bioconductor (Where this question should probably be)? ...
written 6 days ago by Lluís R.380
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Comment: C: gene set overlaps with ranks or weights
... GSEA can be performed in a single function, see function fgsea of `fgsea` package in Bioconductor, or to consider the values of the list you can have a look at `roast` function of limma package. See this recently post about different [GSEA][1] > If you take top 500, the top 100 still have more c ...
written 13 days ago by Lluís R.380
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Comment: C: GO tools using evidence code
... I hope to find it or some directions to go on ...
written 14 days ago by Lluís R.380
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Comment: C: GO tools using evidence code
... For semantic similarity might be more useful the evidence code rather than the relation code, while for enrichment it might be more important the relation between terms than the evidence of said terms. That's why I asked for tools using them, or papers which explore them ...
written 14 days ago by Lluís R.380
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Comment: C: gene set overlaps with ranks or weights
... The weight algorithm in `topGO` doesn't allow to set the weight for each gene before calculating the overlap. Also it is just for gene ontologies, so it may not do what Igor is looking for, if he/she wants to test for a different list of genes. ...
written 14 days ago by Lluís R.380

Latest awards to Lluís R.

Teacher 4 days ago, created an answer with at least 3 up-votes. For A: StackExchange/Area51 bioinformatics is back
Centurion 4 days ago, created 100 posts.
Voter 9 months ago, voted more than 100 times.
Popular Question 17 months ago, created a question with more than 1,000 views. For Which Is An Acceptable Pipeline From Sequencing To Deep Annotation?
Popular Question 19 months ago, created a question with more than 1,000 views. For Which Is An Acceptable Pipeline From Sequencing To Deep Annotation?
Supporter 3.0 years ago, voted at least 25 times.
Autobiographer 3.0 years ago, has more than 80 characters in the information field of the user's profile.

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