User: Lluís R.

gravatar for Lluís R.
Lluís R.760
Reputation:
760
Status:
Trusted
Location:
Spain, Barcelona
Website:
http://b101nfo.blogspo...
Twitter:
Lluis_Rev
Scholar ID:
Google Scholar Page
Last seen:
4 hours ago
Joined:
4 years, 9 months ago
Email:
l************@gmail.com

I am interested nowadays in microarrays, RNA-Seq and genome annotation, GO and pathways. But my goal are to maximize the useful information of each existing experiment. Now I am committing with Bioconductor, you can follow some of my thought in my blog, or in twitter.

Posts by Lluís R.

<prev • 162 results • page 1 of 17 • next >
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Comment: C: How to combine all three Ontology classes (BP, MF and CC) in a single analysis ?
... I think it is not possible, as the topology method is based precisely on the differences on the structure of each sub ontology. But why do you want to do this? ...
written 5 hours ago by Lluís R.760
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Comment: C: Posting a preprint paper on biostars.com
... I think it is as good venue to share your research as other. Perhaps here there are more expert than other forums, so it might be worth it. ...
written 23 days ago by Lluís R.760
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Comment: C: pathview R package not working
... I think the answers is on the warnings you get: ``` Warning: None of the genes or compounds mapped to the pathway! Argument gene.idtype or cpd.idtype may be wrong. ``` ...
written 25 days ago by Lluís R.760
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Comment: C: Difference between GO.db, biomaRt, and org.Hs.eg.db in GO annotations
... Totally true, but that was not the question I was answering, it asked specifically for three packages. And this is duly noted in the KEGG.db package and in the info of the dataitself. This is due to a change in the KEGG license. One can access to the whole KEGG database using the API though. ...
written 6 weeks ago by Lluís R.760
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Comment: C: Why are people not working on gene prioritization and candidate gene selection f
... Wasn't this paper https://journals.plos.org/plosbiology/article?id=10.1371/journal.pbio.2006643 ...
written 7 weeks ago by Lluís R.760
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Comment: C: what next after DEGs?
... That depends on your "biological" question and your data. What question do you want to answer? ...
written 8 weeks ago by Lluís R.760
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Comment: C: Difference between GO.db, biomaRt, and org.Hs.eg.db in GO annotations
... Yes, it is the basic information of the updates of Bioconductor packages. You can find it explained in [Annotation Packages][1]: > Annotation packages contain lightly or non-curated data from a public source and are updated with each Bioconductor release (every 6 months). I'll add it in the or ...
written 9 weeks ago by Lluís R.760
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Comment: C: WGCNA export Network To Cytoscape without trait data, error "Cannot determine no
... Then you need to correct the modgenes variable to the names you want (`nodeNames = rownames(modTOM)[top]`). ...
written 11 weeks ago by Lluís R.760
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Comment: C: Using of WGCNA to identify modules in Normal/Tumor tissues
... If you are going right or not might be better addressed by your supervisor. But it seems reasonable to me ...
written 4 months ago by Lluís R.760
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Comment: C: Using of WGCNA to identify modules in Normal/Tumor tissues
... The way that it is described in the tutorials of WGCNA, yes tumor 1 otherwise 0, but you could also have another variable that is stage, and that would be 0 no tumor, 1 small, 2 bigger, 3 metastasis or whatever. ...
written 4 months ago by Lluís R.760

Latest awards to Lluís R.

Scholar 10 weeks ago, created an answer that has been accepted. For A: Accepted Workflows for Strongly Ontology/Pathway-Driven Analyses of RNA-seq Data
Popular Question 10 weeks ago, created a question with more than 1,000 views. For Google Summer Of Code 2014 Gsoc 2014
Popular Question 9 months ago, created a question with more than 1,000 views. For Which Is An Acceptable Pipeline From Sequencing To Deep Annotation?
Popular Question 9 months ago, created a question with more than 1,000 views. For Google Summer Of Code 2014 Gsoc 2014
Teacher 11 months ago, created an answer with at least 3 up-votes. For A: StackExchange/Area51 bioinformatics is back
Scholar 11 months ago, created an answer that has been accepted. For A: Accepted Workflows for Strongly Ontology/Pathway-Driven Analyses of RNA-seq Data
Scholar 14 months ago, created an answer that has been accepted. For A: Accepted Workflows for Strongly Ontology/Pathway-Driven Analyses of RNA-seq Data
Commentator 18 months ago, created a comment with at least 3 up-votes. For C: StackExchange/Area51 bioinformatics is back
Teacher 19 months ago, created an answer with at least 3 up-votes. For A: StackExchange/Area51 bioinformatics is back
Centurion 19 months ago, created 100 posts.
Voter 2.4 years ago, voted more than 100 times.
Popular Question 3.0 years ago, created a question with more than 1,000 views. For Which Is An Acceptable Pipeline From Sequencing To Deep Annotation?
Popular Question 3.2 years ago, created a question with more than 1,000 views. For Which Is An Acceptable Pipeline From Sequencing To Deep Annotation?
Supporter 4.6 years ago, voted at least 25 times.
Autobiographer 4.6 years ago, has more than 80 characters in the information field of the user's profile.

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