User: Lluís R.

gravatar for Lluís R.
Lluís R.850
Reputation:
850
Status:
Trusted
Location:
Spain, Barcelona
Website:
http://b101nfo.blogspo...
Twitter:
Lluis_Rev
Scholar ID:
Google Scholar Page
Last seen:
10 hours ago
Joined:
5 years, 7 months ago
Email:
l************@gmail.com

I am interested nowadays in microarrays, RNA-Seq and genome annotation, GO and pathways. But my goal are to maximize the useful information of each existing experiment. Now I am committing with Bioconductor, you can follow some of my thought in my blog, or in twitter.

Posts by Lluís R.

<prev • 165 results • page 1 of 17 • next >
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Answer: A: Downloable stats of Bioconductor
... As this seems to be popular since then there is a [package][1] BiocPkgTools, currently only in github to download and analyse the data [1]: https://seandavi.github.io/BiocPkgTools/articles/BiocPkgTools.html#download-statistics ...
written 4 months ago by Lluís R.850
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Comment: C: GO network analysis
... The GO network is fixed, so I understand you want some other type of network. What kind of network do you want? What type of information do you have? ...
written 10 months ago by Lluís R.850
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Comment: C: How to combine all three Ontology classes (BP, MF and CC) in a single analysis ?
... The structure of the GO data, makes such a combination difficult: it is designed to have separate structure. However, I would recommend to run the over-representative analysis and then see which genes map to which GO found over-represented in your analysis. That way you could further filter your gen ...
written 10 months ago by Lluís R.850
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Comment: C: How to combine all three Ontology classes (BP, MF and CC) in a single analysis ?
... I think it is not possible, as the topology method is based precisely on the differences on the structure of each sub ontology. But why do you want to do this? ...
written 10 months ago by Lluís R.850
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Comment: C: Posting a preprint paper on biostars.com
... I think it is as good venue to share your research as other. Perhaps here there are more expert than other forums, so it might be worth it. ...
written 10 months ago by Lluís R.850
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Comment: C: pathview R package not working
... I think the answers is on the warnings you get: ``` Warning: None of the genes or compounds mapped to the pathway! Argument gene.idtype or cpd.idtype may be wrong. ``` ...
written 10 months ago by Lluís R.850
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Comment: C: Difference between GO.db, biomaRt, and org.Hs.eg.db in GO annotations
... Totally true, but that was not the question I was answering, it asked specifically for three packages. And this is duly noted in the KEGG.db package and in the info of the dataitself. This is due to a change in the KEGG license. One can access to the whole KEGG database using the API though. ...
written 11 months ago by Lluís R.850
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Comment: C: Why are people not working on gene prioritization and candidate gene selection f
... Wasn't this paper https://journals.plos.org/plosbiology/article?id=10.1371/journal.pbio.2006643 ...
written 11 months ago by Lluís R.850
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Comment: C: what next after DEGs?
... That depends on your "biological" question and your data. What question do you want to answer? ...
written 12 months ago by Lluís R.850
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Comment: C: Difference between GO.db, biomaRt, and org.Hs.eg.db in GO annotations
... Yes, it is the basic information of the updates of Bioconductor packages. You can find it explained in [Annotation Packages][1]: > Annotation packages contain lightly or non-curated data from a public source and are updated with each Bioconductor release (every 6 months). I'll add it in the or ...
written 12 months ago by Lluís R.850

Latest awards to Lluís R.

Popular Question 2 days ago, created a question with more than 1,000 views. For Google Summer Of Code 2014 Gsoc 2014
Popular Question 3 months ago, created a question with more than 1,000 views. For Google Summer Of Code 2014 Gsoc 2014
Popular Question 3 months ago, created a question with more than 1,000 views. For Installation Of Rnaspace
Scholar 4 months ago, created an answer that has been accepted. For A: Accepted Workflows for Strongly Ontology/Pathway-Driven Analyses of RNA-seq Data
Popular Question 4 months ago, created a question with more than 1,000 views. For Downloable stats of Bioconductor
Good Answer 8 months ago, created an answer that was upvoted at least 5 times. For A: Difference between GO.db, biomaRt, and org.Hs.eg.db in GO annotations
Appreciated 8 months ago, created a post with more than 5 votes. For A: Difference between GO.db, biomaRt, and org.Hs.eg.db in GO annotations
Scholar 12 months ago, created an answer that has been accepted. For A: Accepted Workflows for Strongly Ontology/Pathway-Driven Analyses of RNA-seq Data
Popular Question 12 months ago, created a question with more than 1,000 views. For Google Summer Of Code 2014 Gsoc 2014
Popular Question 19 months ago, created a question with more than 1,000 views. For Which Is An Acceptable Pipeline From Sequencing To Deep Annotation?
Popular Question 19 months ago, created a question with more than 1,000 views. For Google Summer Of Code 2014 Gsoc 2014
Teacher 21 months ago, created an answer with at least 3 up-votes. For A: StackExchange/Area51 bioinformatics is back
Scholar 21 months ago, created an answer that has been accepted. For A: Accepted Workflows for Strongly Ontology/Pathway-Driven Analyses of RNA-seq Data
Scholar 2.0 years ago, created an answer that has been accepted. For A: Accepted Workflows for Strongly Ontology/Pathway-Driven Analyses of RNA-seq Data
Commentator 2.4 years ago, created a comment with at least 3 up-votes. For C: StackExchange/Area51 bioinformatics is back
Teacher 2.4 years ago, created an answer with at least 3 up-votes. For A: StackExchange/Area51 bioinformatics is back
Centurion 2.4 years ago, created 100 posts.
Voter 3.2 years ago, voted more than 100 times.
Popular Question 3.9 years ago, created a question with more than 1,000 views. For Which Is An Acceptable Pipeline From Sequencing To Deep Annotation?
Popular Question 4.0 years ago, created a question with more than 1,000 views. For Which Is An Acceptable Pipeline From Sequencing To Deep Annotation?
Supporter 5.4 years ago, voted at least 25 times.
Autobiographer 5.4 years ago, has more than 80 characters in the information field of the user's profile.

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