User: john.joseph.farrell

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Posts by john.joseph.farrell

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Answer: A: Breakdancer Bam2Cfg.Pl , Coefficient Of Variation Is Too Large, Not Excluding Ou
... I had some issues when running bam2cfg.pl too with the default settings. Two changes helped. I increased the min map quality to -q 40. The other issue is that the software reads from the beginning of the bam file. Since the file is sorted by location, the script ends up reading the reads map ...
written 3.7 years ago by john.joseph.farrell20
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Pindel And Multiple Insert Size Libraries Per Bam File
... When running Pindel, the expected insert size is specified for each bam file in the config file. What should be done when there are 3 libraries with 3 different insert sizes in one bam file. Is there a way to indicate there is 3 libraries and their insert-sizes? Are varying insert size libraries ...
pindel written 3.7 years ago by john.joseph.farrell20 • updated 3.7 years ago by liangkaiye250

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