User: Na Sed

gravatar for Na Sed
Na Sed280
Reputation:
280
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Trusted
Location:
United States
Last seen:
6 months ago
Joined:
5 years, 8 months ago
Email:
n**********@yahoo.com

about me

Posts by Na Sed

<prev • 93 results • page 1 of 10 • next >
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Converting KEGG pathways to SBML with preserving compound and reaction identifiers
... I need to convert KEGG pathways in KGML format to SBML format to obtain the corresponding stoichiometry matrix. I have tried this using KEGGTRanslator but the problem is that KEGGTRanslator drops reaction and compound identifiers. Do you now any software that do the translation and also keep identif ...
kgml keggtranslator stoichiometry matrix kegg sbml written 12 months ago by Na Sed280
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Comment: C: Identification of metabolomic biomarkers
... Thank you very much. ...
written 17 months ago by Na Sed280
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Comment: C: Identification of metabolomic biomarkers
... Hi Kevin, I am looking for a data set containing concentration of metabolites in two groups of samples (normal vs. patient) to test my own biomarker analysis algorithm. Is there any data set available to download? Thanks. ...
written 17 months ago by Na Sed280
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Comment: C: Identification of metabolomic biomarkers
... Thank you very much. Your response is a great help. :) ...
written 18 months ago by Na Sed280
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Identification of metabolomic biomarkers
... Currently I am working in the field of metabolic network analysis and would like to extend my research to identification of metabolomics biomarkers. I am not familiar with different types of metablomics data and try to find text as well as research papers in this area. I have searched a lot but I ha ...
metabolomics metabolite biomarker written 18 months ago by Na Sed280 • updated 18 months ago by Kevin Blighe50k
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Phylogeny trees with variable indel rate
... For a course project, I should go through this paper: "[A Poissonian Model of Indel Rate Variation for Phylogenetic Tree Inference][1]" and fully understand this. I have a shallow background on phylogeny trees and HMM, and have serious problem in understanding the paper. I have tried to understand t ...
phylogeny indel rate alignment hmm written 23 months ago by Na Sed280
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Comment: C: Call for Book Chapter- Essentials of Bioinformatics Vol. I-III (Springer)
... Could you please provide a link to this call for paper in Springer publisher website to verify this ad? I have never seen that Springer works with 'gmail' and 'google drive' for submissions. ...
written 24 months ago by Na Sed280
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Comment: C: Well-defined subtypes of cancers in TCGA database
... Hi Ashitma, In TCGA database, clinical data including several txt files are available and you can download them. In one of the file, you can find subtypes (sorry, currently I do not remember which file includes this info). ...
written 2.6 years ago by Na Sed280
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Comment: C: Need your help to check MsigDB (it takes less than a minute)
... I just found it. The `broadset <- getBroadSets(asBroadUri('BIOCARTA_HDAC_PATHWAY', base='http://software.broadinstitute.org/gsea/msigdb/cards'))` works now!! Thank you very much!! ...
written 3.0 years ago by Na Sed280
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Comment: C: Need your help to check MsigDB (it takes less than a minute)
... Thanks. So, 'getBroadSets' does not work anymore?! ...
written 3.0 years ago by Na Sed280

Latest awards to Na Sed

Popular Question 7 months ago, created a question with more than 1,000 views. For Annotation in ExpressionSet object
Popular Question 12 months ago, created a question with more than 1,000 views. For Annotation in ExpressionSet object
Popular Question 17 months ago, created a question with more than 1,000 views. For Annotation in ExpressionSet object
Popular Question 17 months ago, created a question with more than 1,000 views. For Metabolic network database
Popular Question 17 months ago, created a question with more than 1,000 views. For Well-defined subtypes of cancers in TCGA database
Popular Question 17 months ago, created a question with more than 1,000 views. For Annotation in ExpressionSet object
Popular Question 19 months ago, created a question with more than 1,000 views. For Annotation in ExpressionSet object
Popular Question 23 months ago, created a question with more than 1,000 views. For Annotation in ExpressionSet object
Popular Question 23 months ago, created a question with more than 1,000 views. For Needed appropriate journal to submit my paper
Popular Question 23 months ago, created a question with more than 1,000 views. For What is the meaning of conservation site in miRNA-mRNA pairing context?
Popular Question 23 months ago, created a question with more than 1,000 views. For Log-transformed RNA-Seq data and linear regression
Popular Question 23 months ago, created a question with more than 1,000 views. For What is the interpretation of the obtained p-value here?
Popular Question 24 months ago, created a question with more than 1,000 views. For Annotation in ExpressionSet object
Popular Question 2.6 years ago, created a question with more than 1,000 views. For Annotation in ExpressionSet object
Popular Question 2.6 years ago, created a question with more than 1,000 views. For Log-transformed RNA-Seq data and linear regression
Popular Question 2.6 years ago, created a question with more than 1,000 views. For CNV data from TCGA
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Commentator 3.0 years ago, created a comment with at least 3 up-votes. For C: How to calculate the number of genes has specific repeat on it?
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Popular Question 3.4 years ago, created a question with more than 1,000 views. For Is there anyway to get BioGrid gene interaction network automatically using R?
Popular Question 3.6 years ago, created a question with more than 1,000 views. For Log-transformed RNA-Seq data and linear regression
Popular Question 3.6 years ago, created a question with more than 1,000 views. For Batch ID in TCGA database

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