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3.1k
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Comment: Comment: CellRanger runs into error when running fastq files from SRA
22 months ago by Rob 6.7k
2
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0
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1.2k
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Comment: Comment: Does RSEM ignore STAR's splice-aware nature?
22 months ago by Rob 6.7k
1
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1
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2.0k
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Comment: Comment: found no concordant and consistent mapping using Salmon
22 months ago by Rob 6.7k
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1
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2.0k
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Comment: Comment: found no concordant and consistent mapping using Salmon
23 months ago by Rob 6.7k
2
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0
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1.1k
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Answer: Answer: strand specificity
23 months ago by Rob 6.7k
1
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1
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3.3k
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Comment: Comment: How to get TPM values from the STAR output?
23 months ago by Rob 6.7k
1
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1
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3.3k
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Comment: Comment: How to get TPM values from the STAR output?
23 months ago by Rob 6.7k
0
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1
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1.8k
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Comment: Comment: Help needed to troubleshoot a Bioconda recipe for a Rust tool
23 months ago by Rob 6.7k
1
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1
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1.8k
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Comment: Comment: Help needed to troubleshoot a Bioconda recipe for a Rust tool
23 months ago by Rob 6.7k
1
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1
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1.8k
views
Comment: Comment: Help needed to troubleshoot a Bioconda recipe for a Rust tool
23 months ago by Rob 6.7k
2
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0
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1.8k
views
Comment: Comment: Help needed to troubleshoot a Bioconda recipe for a Rust tool
23 months ago by Rob 6.7k
2
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1
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1.8k
views
Answer: Answer: Help needed to troubleshoot a Bioconda recipe for a Rust tool
23 months ago by Rob 6.7k
3
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1
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1.7k
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Answer: Answer: Effect of Bootstrapping/Gibbs Sampling in Salmon Counts
2.1 years ago by Rob 6.7k
0
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1
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924
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Answer: Answer: Is it correct to use Tophat2 directly followed by Cuffquant to only align to the
2.1 years ago by Rob 6.7k
1
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1
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1.9k
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Comment: Comment: How does Salmon bootstrapping work?
2.1 years ago by Rob 6.7k
4
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1
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1.9k
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Answer: Answer: How does Salmon bootstrapping work?
2.1 years ago by Rob 6.7k
0
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0
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696
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Answer: Answer: Why is an effective length of a trasncript better than normal length?
2.3 years ago by Rob 6.7k
0
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0
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1.2k
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Comment: Comment: Is there a minimum read count or number of genes for Salmon bias correction?
2.3 years ago by Rob 6.7k
3
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0
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2.7k
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Answer: Answer: Fastest way to parse through a fasta file in python
2.4 years ago by Rob 6.7k
2
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0
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2.2k
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Comment: Comment: error when indexing transcroptome using salmon
2.5 years ago by Rob 6.7k
1
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1
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2.2k
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Comment: Comment: error when indexing transcroptome using salmon
2.5 years ago by Rob 6.7k
1
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1
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8.7k
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Comment: Comment: Jellyfish -C option explanation
2.5 years ago by Rob 6.7k
4
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2
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1.2k
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Answer: Answer: jellyfish count discrepancy between results obtained with and without -C optio
2.5 years ago by Rob 6.7k
1
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1
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1.9k
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Comment: Comment: Very low read counts for PD1 when using STAR aligner compared to BWA
2.6 years ago by Rob 6.7k
1
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1
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1.9k
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Answer: Answer: Very low read counts for PD1 when using STAR aligner compared to BWA
2.6 years ago by Rob 6.7k
4
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1
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6.1k
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Answer: Answer: UMAP vs "rigorous" t-SNE
2.8 years ago by Rob 6.7k
4
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1
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2.5k
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Answer: Answer: k-mer counters - presence/absence matrix
2.9 years ago by Rob 6.7k
2
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0
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6.9k
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Comment: Comment: Tools to generate spliced/unspliced counts
2.9 years ago by Rob 6.7k
0
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2
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2.1k
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Answer: Answer: STARsolo --EmptyDrops_CR parameters
3.0 years ago by Rob 6.7k
2
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1
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2.8k
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Answer: Answer: Star alingment, Salmon quantification
3.1 years ago by Rob 6.7k
3
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0
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1.3k
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Comment: Comment: Getting libType without running quantification with Salmon
3.1 years ago by Rob 6.7k
6
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1
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2.5k
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Answer: Answer: Inconsistency between alignment rates of BWA-mem and bowtie2
3.2 years ago by Rob 6.7k
0
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1
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1.9k
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Comment: C: Mapping rate troubles
3.3 years ago by Rob 6.7k
0
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1
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2.8k
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Comment: C: Salmon BAM target length different to FASTA file sequence length
3.4 years ago by Rob 6.7k
1
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1
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2.8k
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Comment: C: Salmon BAM target length different to FASTA file sequence length
3.4 years ago by Rob 6.7k
1
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2
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2.8k
views
Comment: C: Salmon BAM target length different to FASTA file sequence length
3.4 years ago by Rob 6.7k
2
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1
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6.8k
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Comment: C: How to change cellranger multimapping algorithm
3.4 years ago by Rob 6.7k
1
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1
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6.8k
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Comment: C: How to change cellranger multimapping algorithm
3.4 years ago by Rob 6.7k
2
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0
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1.8k
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Comment: C: RNA-Seq junction reads overhang imbalance
3.5 years ago by Rob 6.7k
3
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0
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1.9k
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Answer: C: Quantify Isoforms in RNA-Seq data
3.6 years ago by Rob 6.7k
10
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1
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8.3k
views
Answer: A: Rust or C++, what to learn after Go for high-performance bioinformatics tools?
3.7 years ago by Rob 6.7k
11
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0
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8.3k
views
Answer: A: Rust or C++, what to learn after Go for high-performance bioinformatics tools?
3.7 years ago by Rob 6.7k
2
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0
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6.5k
views
Comment: C: update salmon with conda
3.7 years ago by Rob 6.7k
2
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1
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6.5k
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Answer: A: update salmon with conda
3.7 years ago by Rob 6.7k
1
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0
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9.2k
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Comment: C: How does salmon deal with decoy?
3.7 years ago by Rob 6.7k
14
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2
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9.2k
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Comment: C: How does salmon deal with decoy?
3.7 years ago by Rob 6.7k
4
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1
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2.7k
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Answer: A: Gibbs sampling/bootstrap replicates in Salmon
3.7 years ago by Rob 6.7k
0
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1
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1.6k
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Comment: C: Transcripts with no read support
3.8 years ago by Rob 6.7k
0
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2
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1.6k
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Comment: C: Transcripts with no read support
3.8 years ago by Rob 6.7k
2
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1
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3.5k
views
Answer: A: How can I align single RNA seq(scRNAseq) data by using STAR or another aligner?
3.8 years ago by Rob 6.7k
350 results • Page 2 of 7
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