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406
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Comment: Comment: A c library for reading and writing sequences in fasta and fastq format.
7 weeks ago by Rob 6.5k
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1
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464
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Comment: Comment: Mapping vs Alignment mode in Salmon
11 weeks ago by Rob 6.5k
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1
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464
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Answer: Answer: Mapping vs Alignment mode in Salmon
11 weeks ago by Rob 6.5k
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703
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Answer: Answer: is oxford nanopore technology data paired or single end sequencing?
11 weeks ago by Rob 6.5k
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0
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488
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Comment: Comment: Downstream analysis from STAR Alignment at transcript level
3 months ago by Rob 6.5k
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488
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Comment: Comment: Downstream analysis from STAR Alignment at transcript level
3 months ago by Rob 6.5k
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1
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488
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Answer: Answer: Downstream analysis from STAR Alignment at transcript level
3 months ago by Rob 6.5k
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0
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469
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Comment: Comment: salmon with long reads
3 months ago by Rob 6.5k
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1
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1.4k
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Comment: Comment: How to speed Salmon index up
3 months ago by Rob 6.5k
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1
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1.4k
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Comment: Comment: How to speed Salmon index up
3 months ago by Rob 6.5k
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1
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469
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Answer: Answer: salmon with long read
3 months ago by Rob 6.5k
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0
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1.1k
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Answer: Answer: What Are The Most Influential Bioinformatics/Computational Biology Papers Of 202
4 months ago by Rob 6.5k
4
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0
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615
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Answer: Answer: Fetch Fastq files directly for SRA data
7 months ago by Rob 6.5k
2
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0
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3.4k
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Comment: Comment: A list of technical advantages of Snakemake over Nextflow | Cloud solution for S
7 months ago by Rob 6.5k
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1
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898
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Comment: Comment: Problem creating salmon index
9 months ago by Rob 6.5k
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0
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833
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Answer: Answer: scRNAseq: thoughts on merging datasets generating from different version of 10x
9 months ago by Rob 6.5k
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1
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1.8k
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Comment: Comment: Mapping vs Alignment
9 months ago by Rob 6.5k
5
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1
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1.8k
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Answer: Answer: Mapping vs Alignment
9 months ago by Rob 6.5k
1
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2
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1.8k
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Comment: Comment: How to discard alignments from SAM/BAM file that have mismatches
10 months ago by Rob 6.5k
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1
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763
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Answer: Answer: How does salmon uses polyester?
11 months ago by Rob 6.5k
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0
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2.7k
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Comment: Comment: g++: error：unrecognized command line option ‘-std=c++2a’
11 months ago by Rob 6.5k
2
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0
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2.2k
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Comment: Comment: Obtaining TPM values from STAR alignment and counts with featurecounts using R's
12 months ago by Rob 6.5k
1
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0
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820
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Answer: Answer: How to get fraction of unspliced reads for specific gene from scRNAseq Cell Rang
13 months ago by Rob 6.5k
5
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2
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1.5k
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Answer: Answer: How does 10x Genomics 3' single cell data have reads aligning to exons that aren
13 months ago by Rob 6.5k
2
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1
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1.4k
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Comment: Comment: salmon output interpretation
13 months ago by Rob 6.5k
2
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0
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2.3k
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Comment: Comment: long read + salmon? (transcript abundance)
14 months ago by Rob 6.5k
6
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1
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2.3k
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Answer: Answer: long read + salmon? (transcript abundance)
updated 14 months ago by 82k • written 14 months ago by 6.5k
1
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1
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894
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Answer: Answer: Salmon lib_format_counts.json - explanation
14 months ago by Rob 6.5k
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2
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1.0k
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Answer: Answer: Salmon TPM calculation constant
14 months ago by Rob 6.5k
4
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0
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1.3k
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Comment: Comment: KMP algorithm's time complexity
15 months ago by Rob 6.5k
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1
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8.1k
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Comment: Comment: Rust or C++, what to learn after Go for high-performance bioinformatics tools?
15 months ago by Rob 6.5k
6
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0
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1.2k
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Comment: Comment: How can I check if an RNA-Seq data is stranded (strand-specific) or not?
16 months ago by Rob 6.5k
1
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1
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2.2k
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Comment: Comment: When is it advantageous to use a non-splice aware aligner like BowTie2 over a sp
17 months ago by Rob 6.5k
0
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1
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1.1k
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Comment: Comment: CellRanger v. 2.0 and v. 7.0
17 months ago by Rob 6.5k
1
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1
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1.1k
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Answer: Answer: CellRanger v. 2.0 and v. 7.0
17 months ago by Rob 6.5k
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0
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2.9k
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Comment: Comment: What does the fragment length (-l) argument in Kallisto actually do?
17 months ago by Rob 6.5k
1
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0
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927
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Comment: Comment: High discrepancy between Primary estimate and Bootstraps from Salmon
18 months ago by Rob 6.5k
3
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1
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927
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Answer: Answer: High discrepancy between Primary estimate and Bootstraps from Salmon
18 months ago by Rob 6.5k
3
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0
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543
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Answer: Answer: Stranded or unstranded? That is the question
18 months ago by Rob 6.5k
2
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1
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880
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Answer: Answer: Salmon libtype guessing and mapping bias
19 months ago by Rob 6.5k
2
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0
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2.6k
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Answer: Answer: Can bioinformatics Phds be completely or almost completely done remotely?
19 months ago by Rob 6.5k
1
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1
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648
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Answer: Answer: Splice aware or not for RNA sequence data
20 months ago by Rob 6.5k
1
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0
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3.0k
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Comment: Comment: CellRanger runs into error when running fastq files from SRA
20 months ago by Rob 6.5k
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1
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3.0k
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Comment: Comment: CellRanger runs into error when running fastq files from SRA
20 months ago by Rob 6.5k
2
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0
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1.1k
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Comment: Comment: Does RSEM ignore STAR's splice-aware nature?
21 months ago by Rob 6.5k
1
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1
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1.9k
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Comment: Comment: found no concordant and consistent mapping using Salmon
21 months ago by Rob 6.5k
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1
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1.9k
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Comment: Comment: found no concordant and consistent mapping using Salmon
21 months ago by Rob 6.5k
2
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0
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1.1k
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Answer: Answer: strand specificity
21 months ago by Rob 6.5k
1
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1
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3.1k
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Comment: Comment: How to get TPM values from the STAR output?
21 months ago by Rob 6.5k
1
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1
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3.1k
views
Comment: Comment: How to get TPM values from the STAR output?
21 months ago by Rob 6.5k
343 results • Page 1 of 7
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