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2
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1.9k
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Comment: Comment: A list of technical advantages of Snakemake over Nextflow | Cloud solution for S
7 days ago by Rob 6.2k
0
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1
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385
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Comment: Comment: Problem creating salmon index
8 weeks ago by Rob 6.2k
0
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0
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398
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Answer: Answer: scRNAseq: thoughts on merging datasets generating from different version of 10x
9 weeks ago by Rob 6.2k
1
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1
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524
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Comment: Comment: Mapping vs Alignment
10 weeks ago by Rob 6.2k
5
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1
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524
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Answer: Answer: Mapping vs Alignment
11 weeks ago by Rob 6.2k
1
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2
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757
views
Comment: Comment: How to discard alignments from SAM/BAM file that have mismatches
12 weeks ago by Rob 6.2k
1
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1
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481
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Answer: Answer: How does salmon uses polyester?
4 months ago by Rob 6.2k
0
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0
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1.3k
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Comment: Comment: g++: error：unrecognized command line option ‘-std=c++2a’
4 months ago by Rob 6.2k
2
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0
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1.1k
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Comment: Comment: Obtaining TPM values from STAR alignment and counts with featurecounts using R's
4 months ago by Rob 6.2k
1
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0
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447
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Answer: Answer: How to get fraction of unspliced reads for specific gene from scRNAseq Cell Rang
6 months ago by Rob 6.2k
5
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2
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821
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Answer: Answer: How does 10x Genomics 3' single cell data have reads aligning to exons that aren
6 months ago by Rob 6.2k
2
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1
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863
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Comment: Comment: salmon output interpretation
6 months ago by Rob 6.2k
2
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0
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1.2k
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Comment: Comment: long read + salmon? (transcript abundance)
6 months ago by Rob 6.2k
4
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1
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1.2k
views
Answer: Answer: long read + salmon? (transcript abundance)
updated 6 months ago by 76k • written 6 months ago by 6.2k
1
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1
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601
views
Answer: Answer: Salmon lib_format_counts.json - explanation
6 months ago by Rob 6.2k
1
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2
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605
views
Answer: Answer: Salmon TPM calculation constant
6 months ago by Rob 6.2k
4
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0
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914
views
Comment: Comment: KMP algorithm's time complexity
8 months ago by Rob 6.2k
0
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1
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7.1k
views
Comment: Comment: Rust or C++, what to learn after Go for high-performance bioinformatics tools?
8 months ago by Rob 6.2k
6
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0
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861
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Comment: Comment: How can I check if an RNA-Seq data is stranded (strand-specific) or not?
9 months ago by Rob 6.2k
1
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1
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1.5k
views
Comment: Comment: When is it advantageous to use a non-splice aware aligner like BowTie2 over a sp
9 months ago by Rob 6.2k
0
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1
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644
views
Comment: Comment: CellRanger v. 2.0 and v. 7.0
10 months ago by Rob 6.2k
1
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1
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644
views
Answer: Answer: CellRanger v. 2.0 and v. 7.0
10 months ago by Rob 6.2k
1
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0
replies
2.2k
views
Comment: Comment: What does the fragment length (-l) argument in Kallisto actually do?
10 months ago by Rob 6.2k
1
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0
replies
647
views
Comment: Comment: High discrepancy between Primary estimate and Bootstraps from Salmon
11 months ago by Rob 6.2k
3
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1
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647
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Answer: Answer: High discrepancy between Primary estimate and Bootstraps from Salmon
11 months ago by Rob 6.2k
3
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0
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368
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Answer: Answer: Stranded or unstranded? That is the question
11 months ago by Rob 6.2k
2
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1
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615
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Answer: Answer: Salmon libtype guessing and mapping bias
12 months ago by Rob 6.2k
2
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0
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2.0k
views
Answer: Answer: Can bioinformatics Phds be completely or almost completely done remotely?
12 months ago by Rob 6.2k
1
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1
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452
views
Answer: Answer: Splice aware or not for RNA sequence data
13 months ago by Rob 6.2k
1
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0
replies
2.1k
views
Comment: Comment: CellRanger runs into error when running fastq files from SRA
13 months ago by Rob 6.2k
0
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1
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2.1k
views
Comment: Comment: CellRanger runs into error when running fastq files from SRA
13 months ago by Rob 6.2k
2
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0
replies
704
views
Comment: Comment: Does RSEM ignore STAR's splice-aware nature?
13 months ago by Rob 6.2k
1
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1
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1.5k
views
Comment: Comment: found no concordant and consistent mapping using Salmon
14 months ago by Rob 6.2k
0
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1
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1.5k
views
Comment: Comment: found no concordant and consistent mapping using Salmon
14 months ago by Rob 6.2k
2
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0
replies
744
views
Answer: Answer: strand specificity
14 months ago by Rob 6.2k
1
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1
reply
2.3k
views
Comment: Comment: How to get TPM values from the STAR output?
14 months ago by Rob 6.2k
1
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1
reply
2.3k
views
Comment: Comment: How to get TPM values from the STAR output?
14 months ago by Rob 6.2k
0
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1
reply
1.3k
views
Comment: Comment: Help needed to troubleshoot a Bioconda recipe for a Rust tool
14 months ago by Rob 6.2k
1
vote
1
reply
1.3k
views
Comment: Comment: Help needed to troubleshoot a Bioconda recipe for a Rust tool
14 months ago by Rob 6.2k
1
vote
1
reply
1.3k
views
Comment: Comment: Help needed to troubleshoot a Bioconda recipe for a Rust tool
14 months ago by Rob 6.2k
2
votes
0
replies
1.3k
views
Comment: Comment: Help needed to troubleshoot a Bioconda recipe for a Rust tool
14 months ago by Rob 6.2k
2
votes
1
reply
1.3k
views
Answer: Answer: Help needed to troubleshoot a Bioconda recipe for a Rust tool
14 months ago by Rob 6.2k
3
votes
1
reply
1.0k
views
Answer: Answer: Effect of Bootstrapping/Gibbs Sampling in Salmon Counts
16 months ago by Rob 6.2k
0
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1
reply
685
views
Answer: Answer: Is it correct to use Tophat2 directly followed by Cuffquant to only align to the
16 months ago by Rob 6.2k
1
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1
reply
1.3k
views
Comment: Comment: How does Salmon bootstrapping work?
17 months ago by Rob 6.2k
4
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1
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1.3k
views
Answer: Answer: How does Salmon bootstrapping work?
17 months ago by Rob 6.2k
0
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0
replies
483
views
Answer: Answer: Why is an effective length of a trasncript better than normal length?
19 months ago by Rob 6.2k
0
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0
replies
892
views
Comment: Comment: Is there a minimum read count or number of genes for Salmon bias correction?
19 months ago by Rob 6.2k
3
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0
replies
2.0k
views
Answer: Answer: Fastest way to parse through a fasta file in python
20 months ago by Rob 6.2k
2
votes
0
replies
1.6k
views
Comment: Comment: error when indexing transcroptome using salmon
21 months ago by Rob 6.2k
330 results • Page 1 of 7
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