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1
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0
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264
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Answer:
Answer: How to get fraction of unspliced reads for specific gene from scRNAseq Cell Rang
5 days ago by
Rob
5.9k
5
votes
2
replies
372
views
Answer:
Answer: How does 10x Genomics 3' single cell data have reads aligning to exons that aren
20 days ago by
Rob
5.9k
2
votes
1
reply
410
views
Comment:
Comment: salmon output interpretation
24 days ago by
Rob
5.9k
2
votes
0
replies
390
views
Comment:
Comment: long read + salmon? (transcript abundance)
27 days ago by
Rob
5.9k
3
votes
1
reply
390
views
Answer:
Answer: long read + salmon? (transcript abundance)
updated 27 days ago by
ATpoint
71k • written 27 days ago by
Rob
5.9k
1
vote
1
reply
398
views
Answer:
Answer: Salmon lib_format_counts.json - explanation
28 days ago by
Rob
5.9k
1
vote
2
replies
274
views
Answer:
Answer: Salmon TPM calculation constant
4 weeks ago by
Rob
5.9k
4
votes
0
replies
629
views
Comment:
Comment: KMP algorithm's time complexity
11 weeks ago by
Rob
5.9k
0
votes
1
reply
6.2k
views
Comment:
Comment: Rust or C++, what to learn after Go for high-performance bioinformatics tools?
12 weeks ago by
Rob
5.9k
6
votes
0
replies
516
views
Comment:
Comment: How can I check if an RNA-Seq data is stranded (strand-specific) or not?
3 months ago by
Rob
5.9k
1
vote
1
reply
1.0k
views
Comment:
Comment: When is it advantageous to use a non-splice aware aligner like BowTie2 over a sp
4 months ago by
Rob
5.9k
0
votes
1
reply
448
views
Comment:
Comment: CellRanger v. 2.0 and v. 7.0
4 months ago by
Rob
5.9k
1
vote
1
reply
448
views
Answer:
Answer: CellRanger v. 2.0 and v. 7.0
4 months ago by
Rob
5.9k
1
vote
0
replies
1.4k
views
Comment:
Comment: What does the fragment length (-l) argument in Kallisto actually do?
4 months ago by
Rob
5.9k
1
vote
0
replies
478
views
Comment:
Comment: High discrepancy between Primary estimate and Bootstraps from Salmon
5 months ago by
Rob
5.9k
3
votes
1
reply
478
views
Answer:
Answer: High discrepancy between Primary estimate and Bootstraps from Salmon
5 months ago by
Rob
5.9k
3
votes
0
replies
276
views
Answer:
Answer: Stranded or unstranded? That is the question
5 months ago by
Rob
5.9k
2
votes
1
reply
378
views
Answer:
Answer: Salmon libtype guessing and mapping bias
6 months ago by
Rob
5.9k
2
votes
0
replies
1.3k
views
Answer:
Answer: Can bioinformatics Phds be completely or almost completely done remotely?
6 months ago by
Rob
5.9k
1
vote
1
reply
349
views
Answer:
Answer: Splice aware or not for RNA sequence data
7 months ago by
Rob
5.9k
1
vote
0
replies
1.3k
views
Comment:
Comment: CellRanger runs into error when running fastq files from SRA
7 months ago by
Rob
5.9k
0
votes
1
reply
1.3k
views
Comment:
Comment: CellRanger runs into error when running fastq files from SRA
7 months ago by
Rob
5.9k
2
votes
0
replies
452
views
Comment:
Comment: Does RSEM ignore STAR's splice-aware nature?
8 months ago by
Rob
5.9k
1
vote
1
reply
1.1k
views
Comment:
Comment: found no concordant and consistent mapping using Salmon
8 months ago by
Rob
5.9k
0
votes
1
reply
1.1k
views
Comment:
Comment: found no concordant and consistent mapping using Salmon
8 months ago by
Rob
5.9k
2
votes
0
replies
523
views
Answer:
Answer: strand specificity
8 months ago by
Rob
5.9k
1
vote
1
reply
1.4k
views
Comment:
Comment: How to get TPM values from the STAR output?
8 months ago by
Rob
5.9k
1
vote
1
reply
1.4k
views
Comment:
Comment: How to get TPM values from the STAR output?
8 months ago by
Rob
5.9k
0
votes
1
reply
1.0k
views
Comment:
Comment: Help needed to troubleshoot a Bioconda recipe for a Rust tool
8 months ago by
Rob
5.9k
1
vote
1
reply
1.0k
views
Comment:
Comment: Help needed to troubleshoot a Bioconda recipe for a Rust tool
8 months ago by
Rob
5.9k
1
vote
1
reply
1.0k
views
Comment:
Comment: Help needed to troubleshoot a Bioconda recipe for a Rust tool
8 months ago by
Rob
5.9k
2
votes
0
replies
1.0k
views
Comment:
Comment: Help needed to troubleshoot a Bioconda recipe for a Rust tool
8 months ago by
Rob
5.9k
2
votes
1
reply
1.0k
views
Answer:
Answer: Help needed to troubleshoot a Bioconda recipe for a Rust tool
8 months ago by
Rob
5.9k
3
votes
1
reply
620
views
Answer:
Answer: Effect of Bootstrapping/Gibbs Sampling in Salmon Counts
10 months ago by
Rob
5.9k
0
votes
1
reply
581
views
Answer:
Answer: Is it correct to use Tophat2 directly followed by Cuffquant to only align to the
10 months ago by
Rob
5.9k
1
vote
1
reply
894
views
Comment:
Comment: How does Salmon bootstrapping work?
11 months ago by
Rob
5.9k
4
votes
1
reply
894
views
Answer:
Answer: How does Salmon bootstrapping work?
11 months ago by
Rob
5.9k
0
votes
0
replies
331
views
Answer:
Answer: Why is an effective length of a trasncript better than normal length?
13 months ago by
Rob
5.9k
0
votes
0
replies
746
views
Comment:
Comment: Is there a minimum read count or number of genes for Salmon bias correction?
13 months ago by
Rob
5.9k
3
votes
0
replies
1.6k
views
Answer:
Answer: Fastest way to parse through a fasta file in python
14 months ago by
Rob
5.9k
2
votes
0
replies
1.1k
views
Comment:
Comment: error when indexing transcroptome using salmon
15 months ago by
Rob
5.9k
1
vote
1
reply
1.1k
views
Comment:
Comment: error when indexing transcroptome using salmon
15 months ago by
Rob
5.9k
1
vote
1
reply
6.8k
views
Comment:
Comment: Jellyfish -C option explanation
15 months ago by
Rob
5.9k
4
votes
2
replies
770
views
Answer:
Answer: jellyfish count discrepancy between results obtained with and without -C optio
15 months ago by
Rob
5.9k
1
vote
1
reply
1.2k
views
Comment:
Comment: Very low read counts for PD1 when using STAR aligner compared to BWA
17 months ago by
Rob
5.9k
1
vote
1
reply
1.2k
views
Answer:
Answer: Very low read counts for PD1 when using STAR aligner compared to BWA
17 months ago by
Rob
5.9k
4
votes
1
reply
5.2k
views
Answer:
Answer: UMAP vs "rigorous" t-SNE
19 months ago by
Rob
5.9k
4
votes
1
reply
1.5k
views
Answer:
Answer: k-mer counters - presence/absence matrix
20 months ago by
Rob
5.9k
2
votes
0
replies
4.3k
views
Comment:
Comment: Tools to generate spliced/unspliced counts
21 months ago by
Rob
5.9k
0
votes
2
replies
1.3k
views
Answer:
Answer: STARsolo --EmptyDrops_CR parameters
21 months ago by
Rob
5.9k
321 results • Page
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