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Comment: Comment: Quantification using salmon in alignment-based mode after minimap2 run
22 days ago by Rob 7.2k
3
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1
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922
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Answer: Answer: Quantification using salmon in alignment-based mode after minimap2 run
23 days ago by Rob 7.2k
1
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1
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540
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Answer: Answer: Discrepancy in gene expression between cellranger and velocyto pipeline
3 months ago by Rob 7.2k
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1
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985
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Comment: Comment: Single-cell RNA Sequencing - transcript abundance estimation using Alevin-Fry
4 months ago by Rob 7.2k
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0
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564
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Comment: Comment: Bambu on illumina short reads sequencing
4 months ago by Rob 7.2k
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0
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710
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Comment: Comment: Drastic drop in RNA-seq read mapping rate when disabling gaps in Bowtie2
5 months ago by Rob 7.2k
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0
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841
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Answer: Answer: Salmon RNA-Seq transcript quantification
7 months ago by Rob 7.2k
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1
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5.0k
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Comment: Comment: STAR aligner - Is this still maintained?
9 months ago by Rob 7.2k
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1
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5.0k
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Comment: Comment: STAR aligner - Is this still maintained?
9 months ago by Rob 7.2k
11
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3
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5.0k
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Answer: Answer: STAR aligner - Is this still maintained?
9 months ago by Rob 7.2k
4
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2
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1.3k
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Answer: Answer: How to represent arbitrarily length kmer?
14 months ago by Rob 7.2k
2
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0
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1.6k
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Comment: Comment: Non-existent transcript as a result from Salmon
14 months ago by Rob 7.2k
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1
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1.7k
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Comment: Comment: Minimap2 mapping problem
15 months ago by Rob 7.2k
3
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0
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1.7k
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Answer: Answer: Understanding Differing results between STAR and kallisto
16 months ago by Rob 7.2k
1
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0
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3.3k
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Comment: Comment: What Are The Most Influential Bioinformatics/Computational Biology Papers Of 202
16 months ago by Rob 7.2k
1
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0
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2.4k
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Comment: Comment: Salmon ~ Effective Length
16 months ago by Rob 7.2k
3
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1
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1.5k
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Answer: Answer: Alternative gap introduced when comparing insertion/deletion results between min
16 months ago by Rob 7.2k
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1
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2.4k
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Comment: Comment: Salmon ~ Effective Length
16 months ago by Rob 7.2k
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0
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3.3k
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Comment: Comment: What Are The Most Influential Bioinformatics/Computational Biology Papers Of 202
17 months ago by Rob 7.2k
1
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1
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2.4k
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Answer: Answer: Salmon ~ Effective Length
17 months ago by Rob 7.2k
2
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1
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3.3k
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Answer: Answer: Salmon vs Kallisto vs RSEM
17 months ago by Rob 7.2k
3
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1
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1.1k
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Answer: Answer: Number of non-ATCG nucleotides replaced by Salmon
17 months ago by Rob 7.2k
1
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0
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1.9k
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Comment: Comment: Details on salmon index
17 months ago by Rob 7.2k
5
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1
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1.9k
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Answer: Answer: Details on salmon index
17 months ago by Rob 7.2k
2
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1
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2.1k
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Comment: Comment: A c library for reading and writing sequences in fasta and fastq format.
20 months ago by Rob 7.2k
1
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1
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1.7k
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Comment: Comment: Mapping vs Alignment mode in Salmon
21 months ago by Rob 7.2k
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1
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1.7k
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Answer: Answer: Mapping vs Alignment mode in Salmon
21 months ago by Rob 7.2k
6
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0
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3.9k
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Answer: Answer: is oxford nanopore technology data paired or single end sequencing?
21 months ago by Rob 7.2k
1
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1
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3.2k
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Comment: Comment: Downstream analysis from STAR Alignment at transcript level
21 months ago by Rob 7.2k
1
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1
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3.2k
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Comment: Comment: Downstream analysis from STAR Alignment at transcript level
21 months ago by Rob 7.2k
0
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1
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3.2k
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Answer: Answer: Downstream analysis from STAR Alignment at transcript level
21 months ago by Rob 7.2k
1
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0
replies
2.3k
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Comment: Comment: salmon with long reads
21 months ago by Rob 7.2k
0
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1
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4.9k
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Comment: Comment: How to speed Salmon index up
21 months ago by Rob 7.2k
1
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1
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4.9k
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Comment: Comment: How to speed Salmon index up
21 months ago by Rob 7.2k
3
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1
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2.3k
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Answer: Answer: salmon with long read
21 months ago by Rob 7.2k
6
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2
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3.3k
views
Answer: Answer: What Are The Most Influential Bioinformatics/Computational Biology Papers Of 202
23 months ago by Rob 7.2k
4
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0
replies
1.7k
views
Answer: Answer: Fetch Fastq files directly for SRA data
2.1 years ago by Rob 7.2k
2
votes
0
replies
6.1k
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Comment: Comment: A list of technical advantages of Snakemake over Nextflow | Cloud solution for S
2.1 years ago by Rob 7.2k
0
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1
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2.4k
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Comment: Comment: Problem creating salmon index
2.3 years ago by Rob 7.2k
0
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0
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1.9k
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Answer: Answer: scRNAseq: thoughts on merging datasets generating from different version of 10x
2.3 years ago by Rob 7.2k
1
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1
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4.5k
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Comment: Comment: Mapping vs Alignment
2.3 years ago by Rob 7.2k
8
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1
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4.5k
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Answer: Answer: Mapping vs Alignment
2.3 years ago by Rob 7.2k
1
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2
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4.6k
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Comment: Comment: How to discard alignments from SAM/BAM file that have mismatches
2.4 years ago by Rob 7.2k
1
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1
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1.7k
views
Answer: Answer: How does salmon uses polyester?
2.5 years ago by Rob 7.2k
0
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0
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4.5k
views
Comment: Comment: g++: error：unrecognized command line option ‘-std=c++2a’
2.5 years ago by Rob 7.2k
2
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0
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4.1k
views
Comment: Comment: Obtaining TPM values from STAR alignment and counts with featurecounts using R's
2.5 years ago by Rob 7.2k
1
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0
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2.1k
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Answer: Answer: How to get fraction of unspliced reads for specific gene from scRNAseq Cell Rang
2.6 years ago by Rob 7.2k
6
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2
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4.7k
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Answer: Answer: How does 10x Genomics 3' single cell data have reads aligning to exons that aren
2.6 years ago by Rob 7.2k
2
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1
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3.2k
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Comment: Comment: salmon output interpretation
2.6 years ago by Rob 7.2k
2
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0
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5.2k
views
Comment: Comment: long read + salmon? (transcript abundance)
2.7 years ago by Rob 7.2k
367 results • Page 1 of 8
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