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1
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264
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Answer: Answer: How to get fraction of unspliced reads for specific gene from scRNAseq Cell Rang
5 days ago by Rob 5.9k
5
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2
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372
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Answer: Answer: How does 10x Genomics 3' single cell data have reads aligning to exons that aren
20 days ago by Rob 5.9k
2
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1
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410
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Comment: Comment: salmon output interpretation
24 days ago by Rob 5.9k
2
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0
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390
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Comment: Comment: long read + salmon? (transcript abundance)
27 days ago by Rob 5.9k
3
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1
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390
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Answer: Answer: long read + salmon? (transcript abundance)
updated 27 days ago by 71k • written 27 days ago by 5.9k
1
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1
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398
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Answer: Answer: Salmon lib_format_counts.json - explanation
28 days ago by Rob 5.9k
1
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2
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274
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Answer: Answer: Salmon TPM calculation constant
4 weeks ago by Rob 5.9k
4
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0
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629
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Comment: Comment: KMP algorithm's time complexity
11 weeks ago by Rob 5.9k
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1
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6.2k
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Comment: Comment: Rust or C++, what to learn after Go for high-performance bioinformatics tools?
12 weeks ago by Rob 5.9k
6
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0
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516
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Comment: Comment: How can I check if an RNA-Seq data is stranded (strand-specific) or not?
3 months ago by Rob 5.9k
1
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1
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1.0k
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Comment: Comment: When is it advantageous to use a non-splice aware aligner like BowTie2 over a sp
4 months ago by Rob 5.9k
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1
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448
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Comment: Comment: CellRanger v. 2.0 and v. 7.0
4 months ago by Rob 5.9k
1
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1
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448
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Answer: Answer: CellRanger v. 2.0 and v. 7.0
4 months ago by Rob 5.9k
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0
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1.4k
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Comment: Comment: What does the fragment length (-l) argument in Kallisto actually do?
4 months ago by Rob 5.9k
1
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0
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478
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Comment: Comment: High discrepancy between Primary estimate and Bootstraps from Salmon
5 months ago by Rob 5.9k
3
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1
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478
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Answer: Answer: High discrepancy between Primary estimate and Bootstraps from Salmon
5 months ago by Rob 5.9k
3
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0
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276
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Answer: Answer: Stranded or unstranded? That is the question
5 months ago by Rob 5.9k
2
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1
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378
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Answer: Answer: Salmon libtype guessing and mapping bias
6 months ago by Rob 5.9k
2
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0
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1.3k
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Answer: Answer: Can bioinformatics Phds be completely or almost completely done remotely?
6 months ago by Rob 5.9k
1
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1
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349
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Answer: Answer: Splice aware or not for RNA sequence data
7 months ago by Rob 5.9k
1
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0
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1.3k
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Comment: Comment: CellRanger runs into error when running fastq files from SRA
7 months ago by Rob 5.9k
0
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1
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1.3k
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Comment: Comment: CellRanger runs into error when running fastq files from SRA
7 months ago by Rob 5.9k
2
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0
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452
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Comment: Comment: Does RSEM ignore STAR's splice-aware nature?
8 months ago by Rob 5.9k
1
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1
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1.1k
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Comment: Comment: found no concordant and consistent mapping using Salmon
8 months ago by Rob 5.9k
0
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1
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1.1k
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Comment: Comment: found no concordant and consistent mapping using Salmon
8 months ago by Rob 5.9k
2
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0
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523
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Answer: Answer: strand specificity
8 months ago by Rob 5.9k
1
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1
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1.4k
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Comment: Comment: How to get TPM values from the STAR output?
8 months ago by Rob 5.9k
1
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1
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1.4k
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Comment: Comment: How to get TPM values from the STAR output?
8 months ago by Rob 5.9k
0
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1
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1.0k
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Comment: Comment: Help needed to troubleshoot a Bioconda recipe for a Rust tool
8 months ago by Rob 5.9k
1
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1
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1.0k
views
Comment: Comment: Help needed to troubleshoot a Bioconda recipe for a Rust tool
8 months ago by Rob 5.9k
1
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1
reply
1.0k
views
Comment: Comment: Help needed to troubleshoot a Bioconda recipe for a Rust tool
8 months ago by Rob 5.9k
2
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0
replies
1.0k
views
Comment: Comment: Help needed to troubleshoot a Bioconda recipe for a Rust tool
8 months ago by Rob 5.9k
2
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1
reply
1.0k
views
Answer: Answer: Help needed to troubleshoot a Bioconda recipe for a Rust tool
8 months ago by Rob 5.9k
3
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1
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620
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Answer: Answer: Effect of Bootstrapping/Gibbs Sampling in Salmon Counts
10 months ago by Rob 5.9k
0
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1
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581
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Answer: Answer: Is it correct to use Tophat2 directly followed by Cuffquant to only align to the
10 months ago by Rob 5.9k
1
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1
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894
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Comment: Comment: How does Salmon bootstrapping work?
11 months ago by Rob 5.9k
4
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1
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894
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Answer: Answer: How does Salmon bootstrapping work?
11 months ago by Rob 5.9k
0
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0
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331
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Answer: Answer: Why is an effective length of a trasncript better than normal length?
13 months ago by Rob 5.9k
0
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0
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746
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Comment: Comment: Is there a minimum read count or number of genes for Salmon bias correction?
13 months ago by Rob 5.9k
3
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0
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1.6k
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Answer: Answer: Fastest way to parse through a fasta file in python
14 months ago by Rob 5.9k
2
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0
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1.1k
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Comment: Comment: error when indexing transcroptome using salmon
15 months ago by Rob 5.9k
1
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1
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1.1k
views
Comment: Comment: error when indexing transcroptome using salmon
15 months ago by Rob 5.9k
1
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1
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6.8k
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Comment: Comment: Jellyfish -C option explanation
15 months ago by Rob 5.9k
4
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2
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770
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Answer: Answer: jellyfish count discrepancy between results obtained with and without -C optio
15 months ago by Rob 5.9k
1
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1
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1.2k
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Comment: Comment: Very low read counts for PD1 when using STAR aligner compared to BWA
17 months ago by Rob 5.9k
1
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1
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1.2k
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Answer: Answer: Very low read counts for PD1 when using STAR aligner compared to BWA
17 months ago by Rob 5.9k
4
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1
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5.2k
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Answer: Answer: UMAP vs "rigorous" t-SNE
19 months ago by Rob 5.9k
4
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1
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1.5k
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Answer: Answer: k-mer counters - presence/absence matrix
20 months ago by Rob 5.9k
2
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0
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4.3k
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Comment: Comment: Tools to generate spliced/unspliced counts
21 months ago by Rob 5.9k
0
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2
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1.3k
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Answer: Answer: STARsolo --EmptyDrops_CR parameters
21 months ago by Rob 5.9k
321 results • Page 1 of 7
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