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3
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1
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1.5k
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Answer: Answer: extract gene coordinates and TSS from gene list
14 months ago by Gordon Smyth ★ 7.2k
1
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1
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1.6k
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Answer: Answer: How to remove unknown batch-batch effects from GEO datasets
14 months ago by Gordon Smyth ★ 7.2k
2
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1
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5.2k
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Comment: Comment: Get TPM from RNA counts and gene length?
15 months ago by Gordon Smyth ★ 7.2k
0
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0
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5.2k
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Comment: Comment: Get TPM from RNA counts and gene length?
15 months ago by Gordon Smyth ★ 7.2k
0
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0
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2.2k
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Comment: Comment: Limma for batch effect correction
15 months ago by Gordon Smyth ★ 7.2k
1
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1
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5.2k
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Comment: Comment: Get TPM from RNA counts and gene length?
15 months ago by Gordon Smyth ★ 7.2k
0
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1
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5.2k
views
Comment: Comment: Get TPM from RNA counts and gene length?
16 months ago by Gordon Smyth ★ 7.2k
4
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1
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5.2k
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Answer: Answer: Get TPM from RNA counts and gene length?
16 months ago by Gordon Smyth ★ 7.2k
0
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0
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5.7k
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Comment: Comment: Limma package, how to correct by age and sex?
16 months ago by Gordon Smyth ★ 7.2k
0
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0
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622
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Answer: Answer: How to decide the best threshold for filtering probes in limma
16 months ago by Gordon Smyth ★ 7.2k
1
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0
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594
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Answer: Answer: How should I interpret FB_Plot in microarray analysis?
16 months ago by Gordon Smyth ★ 7.2k
3
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0
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1.2k
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Answer: Answer: How should I deduce the variable from its variance and expectation in the `voom`
16 months ago by Gordon Smyth ★ 7.2k
0
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1
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2.2k
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Answer: Answer: Limma for batch effect correction
16 months ago by Gordon Smyth ★ 7.2k
0
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0
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701
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Answer: Answer: interpreting voom mean variance plots with large BCV and faint kink
16 months ago by Gordon Smyth ★ 7.2k
0
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1
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741
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Answer: Answer: finding error to run edgeR, error in ploting MDS and after that in model matrix
16 months ago by Gordon Smyth ★ 7.2k
6
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0
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2.3k
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Answer: Answer: Hugely different results between edgeR and DESeq2
16 months ago by Gordon Smyth ★ 7.2k
2
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0
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1.1k
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Answer: Answer: Processed RNA seq data publicly available
17 months ago by Gordon Smyth ★ 7.2k
3
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0
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1.8k
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Answer: Answer: R is assigning unique identifier to the same column names when reading in as a d
17 months ago by Gordon Smyth ★ 7.2k
1
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0
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1.9k
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Answer: Answer: R programmin RNA seq
17 months ago by Gordon Smyth ★ 7.2k
3
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0
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2.0k
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Comment: Comment: How to make contrasts to find genes DE in one experimental group but NOT in othe
17 months ago by Gordon Smyth ★ 7.2k
0
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0
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636
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Comment: Comment: GSA type of input data
17 months ago by Gordon Smyth ★ 7.2k
1
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2
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2.0k
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Comment: Comment: How to make contrasts to find genes DE in one experimental group but NOT in othe
17 months ago by Gordon Smyth ★ 7.2k
4
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1
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2.0k
views
Answer: Answer: How to make contrasts to find genes DE in one experimental group but NOT in othe
17 months ago by Gordon Smyth ★ 7.2k
2
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0
replies
1.1k
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Answer: Answer: Strange results from limma output
18 months ago by Gordon Smyth ★ 7.2k
1
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1
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1.3k
views
Comment: Comment: Accounting for differential abundance in differential expression in scRNAseq
18 months ago by Gordon Smyth ★ 7.2k
1
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1
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1.3k
views
Answer: Answer: Accounting for differential abundance in differential expression in scRNAseq
18 months ago by Gordon Smyth ★ 7.2k
0
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0
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1.5k
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Comment: Comment: How to remove duplicate rows by averaging their values having 1 million rows X 1
18 months ago by Gordon Smyth ★ 7.2k
0
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1
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1.5k
views
Answer: Answer: How to remove duplicate rows by averaging their values having 1 million rows X 1
18 months ago by Gordon Smyth ★ 7.2k
5
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1
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2.6k
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Answer: Answer: Different featureCounts data using GTF annotation file from two different source
18 months ago by Gordon Smyth ★ 7.2k
1
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0
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503
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Answer: Answer: microarray differential expression analyses
19 months ago by Gordon Smyth ★ 7.2k
1
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1
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2.5k
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Comment: Comment: Error input data must be numeric in R, how to solve it?
19 months ago by Gordon Smyth ★ 7.2k
2
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1
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2.5k
views
Answer: Answer: Error input data must be numeric in R, how to solve it?
19 months ago by Gordon Smyth ★ 7.2k
1
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1
reply
1.6k
views
Comment: Comment: Filtering bad quality probes in illumina microarray data
19 months ago by Gordon Smyth ★ 7.2k
1
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1
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1.6k
views
Comment: Comment: Filtering bad quality probes in illumina microarray data
19 months ago by Gordon Smyth ★ 7.2k
0
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1
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1.6k
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Answer: Answer: Filtering bad quality probes in illumina microarray data
19 months ago by Gordon Smyth ★ 7.2k
1
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0
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1.0k
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Answer: Answer: is normalize RNA seq raw counts used correctly?
19 months ago by Gordon Smyth ★ 7.2k
0
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1
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1.5k
views
Comment: Comment: Question about edgeR GLM funcionality
19 months ago by Gordon Smyth ★ 7.2k
0
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0
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1.2k
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Answer: Answer: Can I run EdgeR or DESeq2 on bimodal data caused by batch effect?
19 months ago by Gordon Smyth ★ 7.2k
2
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1
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1.5k
views
Answer: Answer: Question about edgeR GLM funcionality
19 months ago by Gordon Smyth ★ 7.2k
1
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0
replies
537
views
Answer: Answer: EdgeR: apply minimum cpm threshold only to certain samples
20 months ago by Gordon Smyth ★ 7.2k
1
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1
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1.2k
views
Comment: Comment: How to apply two tailed paired t-test in limma for DEGs selection?
20 months ago by Gordon Smyth ★ 7.2k
0
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0
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1.3k
views
Answer: Answer: How to perform paired t-test in R for obtaining p-value of each gene?
20 months ago by Gordon Smyth ★ 7.2k
0
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1
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1.2k
views
Answer: Answer: How to apply two tailed paired t-test in limma for DEGs selection?
20 months ago by Gordon Smyth ★ 7.2k
0
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0
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1.4k
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Comment: Comment: A check over my code using Limma DE, starting from normalized data
20 months ago by Gordon Smyth ★ 7.2k
0
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0
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1.0k
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Answer: Answer: HELP- analysis RNa-seq from GEO
20 months ago by Gordon Smyth ★ 7.2k
1
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0
replies
968
views
Comment: Comment: Reads mapping to pseudogenes using RSubread
20 months ago by Gordon Smyth ★ 7.2k
1
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1
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751
views
Answer: Answer: Microarray DEG analysis visualisation
20 months ago by Gordon Smyth ★ 7.2k
1
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0
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968
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Answer: Answer: Reads mapping to pseudogenes using RSubread
20 months ago by Gordon Smyth ★ 7.2k
0
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0
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1.5k
views
Comment: Comment: EDAseq, edgeR libraries cannot be installed in M2 mac
20 months ago by Gordon Smyth ★ 7.2k
1
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0
replies
1.1k
views
Answer: Answer: Create the design matrix for limma differential expression analysis.
20 months ago by Gordon Smyth ★ 7.2k
510 results • Page 3 of 11
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