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349
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Answer: Answer: differential gene expression analysis when not all samples have an untreated cou
2 days ago by Gordon Smyth ★ 7.0k
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389
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Comment: Comment: Limma compare between 3 conditions vs 2 conditions
2 days ago by Gordon Smyth ★ 7.0k
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0
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234
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Answer: Answer: Choosing an FC Threshold
22 days ago by Gordon Smyth ★ 7.0k
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0
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991
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Comment: Comment: Shrink logFC values after edgeR
26 days ago by Gordon Smyth ★ 7.0k
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1
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430
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Comment: Comment: 'Invalid parameter' error to generate a count matrix using featurecounts
29 days ago by Gordon Smyth ★ 7.0k
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1
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430
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Answer: Answer: 'Invalid parameter' error to generate a count matrix using featurecounts
29 days ago by Gordon Smyth ★ 7.0k
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0
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415
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Comment: Comment: Differential express genes in imbalance groups
4 weeks ago by Gordon Smyth ★ 7.0k
3
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3
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415
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Answer: Answer: Differential express genes in imbalance groups
4 weeks ago by Gordon Smyth ★ 7.0k
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204
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Comment: Comment: Computing mid parent value for DE analysis
5 weeks ago by Gordon Smyth ★ 7.0k
1
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0
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618
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Answer: Answer: RNA-seq - Creating SAF from NCBI gff for Subread featureCounts - keep 'gene' or
6 weeks ago by Gordon Smyth ★ 7.0k
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0
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1.2k
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Answer: Answer: MA graphs for EdgeR and Voom vary
6 weeks ago by Gordon Smyth ★ 7.0k
2
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0
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991
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Comment: Comment: Shrink logFC values after edgeR
6 weeks ago by Gordon Smyth ★ 7.0k
2
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0
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706
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Answer: Answer: Seeking Beginner-Friendly Resources for Deepening Understanding of Bioinformatic
6 weeks ago by Gordon Smyth ★ 7.0k
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0
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427
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Comment: Comment: Does the order of the batch variable matter in Limma design matrix?
6 weeks ago by Gordon Smyth ★ 7.0k
0
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0
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3.8k
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Comment: Comment: Can one plot % of variance using the plotMDS function?
6 weeks ago by Gordon Smyth ★ 7.0k
1
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1
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427
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Answer: Answer: Does the order of the batch variable matter in Limma design matrix?
4 weeks ago by Gordon Smyth ★ 7.0k
6
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1
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465
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Answer: Answer: Bayesian Differential Expression
9 weeks ago by Gordon Smyth ★ 7.0k
0
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0
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439
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Comment: Comment: filtering lowly expressed reads
10 weeks ago by Gordon Smyth ★ 7.0k
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0
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221
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Comment: Comment: Design matrix after RUVg correction
10 weeks ago by Gordon Smyth ★ 7.0k
2
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2.8k
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Comment: Comment: Converting LogCPM to raw counts for DESEQ2
10 weeks ago by Gordon Smyth ★ 7.0k
1
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0
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898
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Answer: Answer: EdgeR: upregulated with respect to what group?
10 weeks ago by Gordon Smyth ★ 7.0k
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0
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1.3k
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Answer: Answer: Is there a program to average read counts from technical replicates?
10 weeks ago by Gordon Smyth ★ 7.0k
0
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0
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893
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Comment: Comment: How do I work out which condition the genes are down-regulated in?
10 weeks ago by Gordon Smyth ★ 7.0k
0
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0
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893
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Answer: Answer: How do I work out which condition the genes are down-regulated in?
10 weeks ago by Gordon Smyth ★ 7.0k
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0
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1.6k
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Answer: Answer: positive and negative Fold Change glmLRT test
10 weeks ago by Gordon Smyth ★ 7.0k
0
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0
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726
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Answer: Answer: logFoldChange computed by EdgeR different from naive log2FCcomputed based on rea
10 weeks ago by Gordon Smyth ★ 7.0k
2
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1
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991
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Answer: Answer: Shrink logFC values after edgeR
10 weeks ago by Gordon Smyth ★ 7.0k
1
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1
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458
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Comment: Comment: Differing p-value cutoffs of limma derived DEGs in volcanoplots
11 weeks ago by Gordon Smyth ★ 7.0k
3
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1
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458
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Answer: Answer: Differing p-value cutoffs of limma derived DEGs in volcanoplots
11 weeks ago by Gordon Smyth ★ 7.0k
0
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0
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294
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Comment: Comment: Monotonic genes in results of differential gene expression analysis
12 weeks ago by Gordon Smyth ★ 7.0k
1
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0
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268
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Comment: Comment: Gene expression of microarray data
3 months ago by Gordon Smyth ★ 7.0k
0
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1
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556
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Comment: Comment: Differential RNA editing using edgeR
3 months ago by Gordon Smyth ★ 7.0k
2
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1
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556
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Answer: Answer: Differential RNA editing using edgeR
3 months ago by Gordon Smyth ★ 7.0k
0
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1
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479
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Comment: Comment: how to start DEG analysis after featurecounts
3 months ago by Gordon Smyth ★ 7.0k
0
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0
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1.5k
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Comment: Comment: how to test for differential expression in samples where a global increase in ge
3 months ago by Gordon Smyth ★ 7.0k
0
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1
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1.5k
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Comment: Comment: how to test for differential expression in samples where a global increase in ge
3 months ago by Gordon Smyth ★ 7.0k
0
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0
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1.5k
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Comment: Comment: how to test for differential expression in samples where a global increase in ge
3 months ago by Gordon Smyth ★ 7.0k
0
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1
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1.5k
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Comment: Comment: how to test for differential expression in samples where a global increase in ge
4 months ago by Gordon Smyth ★ 7.0k
1
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0
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1.5k
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Comment: Comment: how to test for differential expression in samples where a global increase in ge
4 months ago by Gordon Smyth ★ 7.0k
1
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1
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1.5k
views
Comment: Comment: how to test for differential expression in samples where a global increase in ge
4 months ago by Gordon Smyth ★ 7.0k
1
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2
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1.5k
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Answer: Answer: how to test for differential expression in samples where a global increase in ge
4 months ago by Gordon Smyth ★ 7.0k
2
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0
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1.6k
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Answer: Answer: Effect of Bootstrapping/Gibbs Sampling in Salmon Counts
4 months ago by Gordon Smyth ★ 7.0k
0
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0
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506
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Comment: Comment: featureCounts error???
5 months ago by Gordon Smyth ★ 7.0k
3
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1
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657
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Answer: Answer: Microarray data analysis with and without contrast
5 months ago by Gordon Smyth ★ 7.0k
2
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0
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6.6k
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Comment: Comment: Illumina HumanHT-12 V4.0 expression beadchip
5 months ago by Gordon Smyth ★ 7.0k
1
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1
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6.6k
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Answer: Answer: Illumina HumanHT-12 V4.0 expression beadchip
5 months ago by Gordon Smyth ★ 7.0k
0
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1
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1.5k
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Job: Laboratory Head Artificial Intelligence and Machine Learning (WEHI, Australia)
Australia machine-learning
5 months ago by Gordon Smyth ★ 7.0k
0
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0
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1.5k
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Answer: Answer: Laboratory Head Artificial Intelligence and Machine Learning (WEHI, Australia)
5 months ago by Gordon Smyth ★ 7.0k
0
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1
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781
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Comment: Comment: Use limma for correlation analysis of RNA-seqdata and continous trait
7 months ago by Gordon Smyth ★ 7.0k
1
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1
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781
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Answer: Answer: Use limma for correlation analysis of RNA-seqdata and continous trait
7 months ago by Gordon Smyth ★ 7.0k
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