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1.5k
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Answer: Answer: EDAseq, edgeR libraries cannot be installed in M2 mac
20 months ago by Gordon Smyth ★ 7.2k
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0
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1.6k
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Comment: Comment: Same results in Limma Toptable as in DESEQ2 results
20 months ago by Gordon Smyth ★ 7.2k
4
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1
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1.6k
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Answer: Answer: Same results in Limma Toptable as in DESEQ2 results
20 months ago by Gordon Smyth ★ 7.2k
1
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1
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2.7k
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Comment: Comment: Limma Differential Expression contrast matrix with several variables
21 months ago by Gordon Smyth ★ 7.2k
1
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1
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2.7k
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Answer: Answer: Limma Differential Expression contrast matrix with several variables
21 months ago by Gordon Smyth ★ 7.2k
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0
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1.5k
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Comment: Comment: Obtaining p-value and fold-change from a table
22 months ago by Gordon Smyth ★ 7.2k
3
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1
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1.5k
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Answer: Answer: Obtaining p-value and fold-change from a table
22 months ago by Gordon Smyth ★ 7.2k
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2.1k
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Comment: Comment: Warning - longer object length is not a multiple of shorter object length
22 months ago by Gordon Smyth ★ 7.2k
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1
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2.1k
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Comment: Comment: Warning - longer object length is not a multiple of shorter object length
22 months ago by Gordon Smyth ★ 7.2k
2
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1
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820
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Answer: Answer: When is the correct timing to perform edgeR cpm calculation?
22 months ago by Gordon Smyth ★ 7.2k
2
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1
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1.5k
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Comment: Comment: Is there any journal article to reference removeBatchEffect function from Limma?
23 months ago by Gordon Smyth ★ 7.2k
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1
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1.3k
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Comment: Comment: scRNA-seq: depositing count matrix without providing raw data
23 months ago by Gordon Smyth ★ 7.2k
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1
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1.3k
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Comment: Comment: scRNA-seq: depositing count matrix without providing raw data
23 months ago by Gordon Smyth ★ 7.2k
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1.3k
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Answer: Answer: scRNA-seq: depositing count matrix without providing raw data
23 months ago by Gordon Smyth ★ 7.2k
1
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0
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978
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Answer: Answer: Include DEGs with a -l2fc in overrepresentation analysis?
23 months ago by Gordon Smyth ★ 7.2k
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1
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943
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Comment: Comment: Logfold change
23 months ago by Gordon Smyth ★ 7.2k
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1.1k
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Comment: Comment: load csv file to edgeR
23 months ago by Gordon Smyth ★ 7.2k
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0
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1.1k
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Answer: Answer: load csv file to edgeR
23 months ago by Gordon Smyth ★ 7.2k
2
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1
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3.0k
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Answer: Answer: File not in gzip format
23 months ago by Gordon Smyth ★ 7.2k
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1
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2.3k
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Comment: Comment: Hi everyone. I want to know how to analysis genes data by using "Welch t test, W
2.0 years ago by Gordon Smyth ★ 7.2k
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1
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2.2k
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Comment: Comment: [R] How to make Contrast for Differential Expressed with more classes than 2
2.0 years ago by Gordon Smyth ★ 7.2k
1
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1
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2.2k
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Comment: Comment: [R] How to make Contrast for Differential Expressed with more classes than 2
2.0 years ago by Gordon Smyth ★ 7.2k
1
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0
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2.2k
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Comment: Comment: [R] How to make Contrast for Differential Expressed with more classes than 2
2.0 years ago by Gordon Smyth ★ 7.2k
0
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1
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2.2k
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Comment: Comment: [R] How to make Contrast for Differential Expressed with more classes than 2
2.0 years ago by Gordon Smyth ★ 7.2k
4
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1
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2.2k
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Answer: Answer: [R] How to make Contrast for Differential Expressed with more classes than 2
2.0 years ago by Gordon Smyth ★ 7.2k
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0
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1.0k
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Comment: Comment: comparing fragmented RNA-seq to non-fragmented RNA-seq
2.0 years ago by Gordon Smyth ★ 7.2k
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1
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1.0k
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Answer: Answer: comparing fragmented RNA-seq to non-fragmented RNA-seq
2.0 years ago by Gordon Smyth ★ 7.2k
1
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1
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1.3k
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Answer: Answer: limma voom -- all genes after filtering are differentially expressed
2.0 years ago by Gordon Smyth ★ 7.2k
4
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2
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906
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Answer: Answer: Error when using edgeR with only two samples
2.0 years ago by Gordon Smyth ★ 7.2k
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0
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569
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Answer: Answer: exact counts tables for limma voom guide
2.0 years ago by Gordon Smyth ★ 7.2k
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0
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1.0k
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Answer: Answer: Limma voom with missing values from mass spectrometry
2.0 years ago by Gordon Smyth ★ 7.2k
2
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1
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1.4k
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Comment: Comment: Limma for paired and unpaired samples. Strange number of DEGs in unpaired sample
2.1 years ago by Gordon Smyth ★ 7.2k
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0
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1.4k
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Comment: Comment: Limma for paired and unpaired samples. Strange number of DEGs in unpaired sample
2.1 years ago by Gordon Smyth ★ 7.2k
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1
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1.4k
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Answer: Answer: Limma for paired and unpaired samples. Strange number of DEGs in unpaired sample
2.1 years ago by Gordon Smyth ★ 7.2k
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3
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3.5k
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Answer: Answer: How to regress out age and sex using limma removeBatchEffect
2.1 years ago by Gordon Smyth ★ 7.2k
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0
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1.8k
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Answer: Answer: How to choose threshold for filtering low counts before Voom transformation?
2.1 years ago by Gordon Smyth ★ 7.2k
0
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0
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726
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Answer: Answer: Limma false positives
2.1 years ago by Gordon Smyth ★ 7.2k
1
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1
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817
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Answer: Answer: Two rounds of batch effect removal
2.1 years ago by Gordon Smyth ★ 7.2k
3
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0
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766
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Answer: Answer: What should I expect to see for chromosome Y gene expression in a male mouse sam
2.1 years ago by Gordon Smyth ★ 7.2k
1
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0
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3.2k
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Comment: Comment: Exclude pseudogenes and lncRNA's from DE-analysis?
2.1 years ago by Gordon Smyth ★ 7.2k
1
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0
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2.2k
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Answer: Answer: Filtering lowly expressed genes
2.1 years ago by Gordon Smyth ★ 7.2k
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1
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1.2k
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Comment: Comment: Advice on designing an EdgeR object in complex experimental setup ?
2.1 years ago by Gordon Smyth ★ 7.2k
0
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0
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901
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Comment: Comment: RNA-seq analysis without replicate
2.2 years ago by Gordon Smyth ★ 7.2k
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0
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1.1k
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Answer: Answer: How to narrow down the Differential analysis gene list?
2.2 years ago by Gordon Smyth ★ 7.2k
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0
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1.1k
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Answer: Answer: P.adjusted values
2.2 years ago by Gordon Smyth ★ 7.2k
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1
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1.4k
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Comment: Comment: Flatten a GTF
2.2 years ago by Gordon Smyth ★ 7.2k
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0
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764
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Comment: Comment: edgeR
2.2 years ago by Gordon Smyth ★ 7.2k
1
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1
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901
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Answer: Answer: RNA-seq analysis without replicate
2.2 years ago by Gordon Smyth ★ 7.2k
1
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1
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1.4k
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Answer: Answer: Flatten a GTF
2.2 years ago by Gordon Smyth ★ 7.2k
0
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0
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1.5k
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Comment: Comment: Unrealistic limma p-value
2.2 years ago by Gordon Smyth ★ 7.2k
510 results • Page 4 of 11
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