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3
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695
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resolving specific clusters from data (spectral clustering)
clustering
updated 23 months ago by ★ 27k • written 23 months ago by 4.0k
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695
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Comment: Comment: resolving specific clusters from data (spectral clustering)
23 months ago by benformatics 4.0k
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0
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771
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Comment: Comment: 3 reads with the same ID in sam file
24 months ago by benformatics 4.0k
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0
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660
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Answer: Answer: GRanges strand identification
2.0 years ago by benformatics 4.0k
1
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0
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2.6k
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Answer: Answer: What counts as a valid biological replicate in single cell RNAseq?
2.0 years ago by benformatics 4.0k
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1
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1.5k
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Comment: Comment: Mitochondrial genes as Seurat markers in nuclear sequencing data
2.0 years ago by benformatics 4.0k
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1.6k
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Answer: Answer: Is it possible to calculate TPM using 10X Genomics public data?
2.0 years ago by benformatics 4.0k
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0
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1.8k
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Comment: Comment: Read counts an order of magnitude higher on one chromosome
2.1 years ago by benformatics 4.0k
2
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1
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1.8k
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Answer: Answer: Read counts an order of magnitude higher on one chromosome
2.1 years ago by benformatics 4.0k
1
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1
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1.8k
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Comment: Comment: Read counts an order of magnitude higher on one chromosome
2.1 years ago by benformatics 4.0k
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0
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12k
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Comment: Comment: Can Illumina bcl2fastq use only one index for demultiplexing dual index sequenci
2.1 years ago by benformatics 4.0k
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1
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12k
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Comment: Comment: Can Illumina bcl2fastq use only one index for demultiplexing dual index sequenci
2.1 years ago by benformatics 4.0k
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1
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1.7k
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Answer: Answer: Amino Acid identity matrix help
2.1 years ago by benformatics 4.0k
1
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3
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1.7k
views
Comment: Comment: Amino Acid identity matrix help
2.1 years ago by benformatics 4.0k
0
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1
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1.7k
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Comment: Comment: Amino Acid identity matrix help
2.1 years ago by benformatics 4.0k
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0
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478
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Answer: Answer: Retrieving starting/ending base cordinates and orientations of genes from TAIR u
2.1 years ago by benformatics 4.0k
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0
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898
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Comment: Comment: What's the difference between library diversity and unique molecules?
2.1 years ago by benformatics 4.0k
1
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1
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898
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Answer: Answer: What's the difference between library diversity and unique molecules?
2.1 years ago by benformatics 4.0k
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0
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3.3k
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Comment: Comment: ATAC-seq fragment size distribution - huge spike at 150 bp
2.1 years ago by benformatics 4.0k
1
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1
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1.9k
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Answer: Answer: Pool or not to pool
2.2 years ago by benformatics 4.0k
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0
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13k
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Comment: Comment: Different Ensembl Ids point to the same gene symbol.
2.2 years ago by benformatics 4.0k
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0
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743
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Comment: Comment: igv viewer
2.3 years ago by benformatics 4.0k
0
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1
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3.3k
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Comment: Comment: ATAC-seq fragment size distribution - huge spike at 150 bp
2.3 years ago by benformatics 4.0k
1
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1
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3.3k
views
Answer: Answer: ATAC-seq fragment size distribution - huge spike at 150 bp
2.3 years ago by benformatics 4.0k
1
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0
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743
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Answer: Answer: Is there a tool available to check a Tm for a DNA fragment or sequence?
2.3 years ago by benformatics 4.0k
0
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1
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1.8k
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Comment: Comment: What do we call a transcript?
2.3 years ago by benformatics 4.0k
1
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2
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1.8k
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Comment: Comment: What do we call a transcript?
2.3 years ago by benformatics 4.0k
4
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0
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1.5k
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Answer: Answer: understanding how cutadapt trims
2.3 years ago by benformatics 4.0k
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2
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1.5k
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Comment: Comment: understanding how cutadapt trims
2.3 years ago by benformatics 4.0k
0
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0
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938
views
Answer: Answer: Output splicing for alignment with gff or gtf
2.3 years ago by benformatics 4.0k
1
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0
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524
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Comment: Comment: Validating splice site using protein sequence
2.4 years ago by benformatics 4.0k
1
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0
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8.6k
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Answer: Answer: Adding optional tags to a BAM file
2.4 years ago by benformatics 4.0k
1
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0
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752
views
Comment: Comment: Are there Batch effect among different samples?
2.6 years ago by benformatics 4.0k
1
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0
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958
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Comment: Comment: How should I deal with my RNAseq result with high % of mutiple aligned reads?
2.6 years ago by benformatics 4.0k
1
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2
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1.4k
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EBI European Nucleotide Archive (ERA) aspera access broken
elixir ebi ena
updated 2.7 years ago by 19k • written 2.7 years ago by 4.0k
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1
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2.0k
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Comment: Comment: Data Manipulation
2.7 years ago by benformatics 4.0k
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0
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2.0k
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Comment: Comment: Data Manipulation
2.7 years ago by benformatics 4.0k
2
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3
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2.0k
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Answer: Answer: Data Manipulation
2.7 years ago by benformatics 4.0k
1
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1
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768
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Comment: Comment: GC bias in small RNA-seq data
2.7 years ago by benformatics 4.0k
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0
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2.0k
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Answer: Answer: How to quantify piRNAs ?
2.7 years ago by benformatics 4.0k
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0
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663
views
Comment: Comment: Mark duplicates the bam files sorted by coordinates
2.8 years ago by benformatics 4.0k
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0
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867
views
Comment: Comment: Germline Cancer Mutations
2.8 years ago by benformatics 4.0k
2
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1
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867
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Answer: Answer: Germline Cancer Mutations
2.8 years ago by benformatics 4.0k
2
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1
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1.9k
views
Answer: Answer: Good or bad idea to annotate with newer genome build?
2.8 years ago by benformatics 4.0k
2
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0
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825
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Answer: Answer: R package for structural variation representation ?
2.8 years ago by benformatics 4.0k
0
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1
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1.3k
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Comment: Comment: TMM normalization and sex effect
2.8 years ago by benformatics 4.0k
0
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0
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662
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Comment: Comment: Weird 8bp peak in (clean) small RNA data
2.8 years ago by benformatics 4.0k
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0
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1.3k
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Comment: Comment: Mapping unique GO term description given a specific GO id
2.8 years ago by benformatics 4.0k
1
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0
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3.4k
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Answer: Answer: Are there any alternatives to Liftoff - Mapping annotations (GFF/GTF) between as
2.8 years ago by benformatics 4.0k
0
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1
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1.1k
views
Comment: Comment: convert genomic bigWig file to transcriptome space
2.8 years ago by benformatics 4.0k
476 results • Page 4 of 10
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