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113
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Answer: Answer: Number of reads supporting a structural variant value in Dragen structural varia
6 hours ago by benformatics 4.1k
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1
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363
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Answer: Answer: Interpret IGV
27 days ago by benformatics 4.1k
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1
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382
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Comment: Comment: heterozygous variant on the X chromosome
27 days ago by benformatics 4.1k
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382
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Comment: Comment: heterozygous variant on the X chromosome
5 weeks ago by benformatics 4.1k
3
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382
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Answer: Answer: heterozygous variant on the X chromosome
5 weeks ago by benformatics 4.1k
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1
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449
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How to determine intra-run and inter-run repeatability in statistically sound manner?
Validation
updated 6 weeks ago by 4.7k • written 6 weeks ago by 4.1k
1
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1
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810
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Comment: Comment: HTSeq-count vs. FeatureCounts: Significant Difference in Results
10 weeks ago by benformatics 4.1k
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1
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837
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Answer: Answer: What is a genomic range that would almost always get decent WGS coverage but is
11 weeks ago by benformatics 4.1k
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1.3k
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Comment: Comment: RNA-Seq mutation calling without germline data
11 weeks ago by benformatics 4.1k
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1
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810
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Answer: Answer: HTSeq-count vs. FeatureCounts: Significant Difference in Results
11 weeks ago by benformatics 4.1k
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0
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777
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Comment: Comment: How the field has changed in the last 5 years, and 25 years (up to 2024)
11 weeks ago by benformatics 4.1k
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1
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752
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Comment: Comment: Problem obtaining RNA-seq counts for whole gene (intron and exon), exon only, an
3 months ago by benformatics 4.1k
2
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1
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1.3k
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Answer: Answer: RNA-Seq mutation calling without germline data
3 months ago by benformatics 4.1k
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1
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1.9k
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Comment: Comment: New Illumina error mode, new BBTools release (39.09) to deal with it
3 months ago by benformatics 4.1k
0
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1
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3.7k
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Comment: Comment: NGS forensics: how to know if data is fabricated
8 months ago by benformatics 4.1k
2
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0
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3.7k
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Comment: Comment: NGS forensics: how to know if data is fabricated
8 months ago by benformatics 4.1k
2
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0
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15k
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Answer: Answer: How Can We Find The Info For 3'Utr And 5'Utr In Gencode Gtf File?
8 months ago by benformatics 4.1k
1
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0
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416
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Answer: Answer: Exon often targeted by mobile element insertions?
11 months ago by benformatics 4.1k
0
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0
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479
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GATK SelectVariants --remove-unused-alternates dropping real INDELs?
GATK
14 months ago by benformatics 4.1k
0
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0
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732
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Comment: Comment: STAR GeneCounts for most genes are 0
14 months ago by benformatics 4.1k
2
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1
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1.4k
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Answer: Answer: Paired-end RNA seq (NextSeq2000): 1-3% if R2 reads are only contain G bases
14 months ago by benformatics 4.1k
0
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0
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725
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Comment: Comment: unbiased clustering of these top 50 genes in seurat
14 months ago by benformatics 4.1k
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0
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751
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Answer: Answer: How to plot two categorical variables in ggridges?
14 months ago by benformatics 4.1k
1
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0
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751
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Comment: Comment: How to plot two categoric variables in ggridges?
14 months ago by benformatics 4.1k
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1
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1.9k
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Answer: Answer: Map genome positions onto protein coordinates?
14 months ago by benformatics 4.1k
1
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0
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902
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Answer: Answer: Get discordant read pairs from bam
15 months ago by benformatics 4.1k
1
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1
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4.4k
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Comment: Comment: Why should ATAC-seq mapped reads be shifted +4 and -5 for +strand and -strand, r
15 months ago by benformatics 4.1k
1
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1
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2.1k
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Answer: Answer: Discussion: Uploading terrabytes of data to NCBI SRA
17 months ago by benformatics 4.1k
1
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0
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1.4k
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Answer: Answer: insert size in bam file do not make sense
18 months ago by benformatics 4.1k
5
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0
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1.8k
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Answer: Answer: How to import a gtf file in R so that it appears in tabular format as if it were
18 months ago by benformatics 4.1k
1
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1
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653
views
Comment: Comment: Assigning cell types to cells based on expression of cell surface markers
18 months ago by benformatics 4.1k
0
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0
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1.3k
views
Answer: Answer: How to label clusters from a UMAP
18 months ago by benformatics 4.1k
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0
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1.0k
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Comment: Comment: Identify Alternative Splicing Event using exon and junction count table
18 months ago by benformatics 4.1k
0
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1
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3.1k
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Answer: Answer: Remove short sequences with length < 50% from a multi-fasta file
18 months ago by benformatics 4.1k
1
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0
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2.1k
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Answer: Answer: I want to rename sequence headers
updated 18 months ago by 44k • written 18 months ago by 4.1k
0
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1
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1.4k
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Comment: Comment: Contig labels in BAM off by 1, how do I fix it?
18 months ago by benformatics 4.1k
1
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1
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1.4k
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Comment: Comment: Contig labels in BAM off by 1, how do I fix it?
18 months ago by benformatics 4.1k
0
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0
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2.5k
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Comment: Comment: monocle single cell differential expression: error message for HSMM <- estimateD
18 months ago by benformatics 4.1k
0
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1
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1.3k
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Comment: Comment: gene id
18 months ago by benformatics 4.1k
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1
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1.3k
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Comment: Comment: gene id
18 months ago by benformatics 4.1k
0
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0
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719
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Answer: Answer: 3' Single Cell RNA Seq Reads mapping to promoter region of gene
18 months ago by benformatics 4.1k
0
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0
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1.3k
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Comment: Comment: Analize RNA-seq data using Hisat2
19 months ago by benformatics 4.1k
1
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0
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1.1k
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Comment: Comment: Filtering mitochondrial reads from ATAC-Seq aligned reads- what to do with reads
19 months ago by benformatics 4.1k
1
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0
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906
views
Comment: Comment: Is the gene-specific PCR efficiency a serious concern for intrasample comparison
20 months ago by benformatics 4.1k
0
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1
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1.4k
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Comment: Comment: error in Genome Mepping by BWA tools in Linux
20 months ago by benformatics 4.1k
2
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0
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877
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Answer: Answer: Fastqs different lanes
20 months ago by benformatics 4.1k
0
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0
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920
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Comment: Comment: Chance that DNA with 3N nucleotide encodes 2 protein with size of N amino-acids
21 months ago by benformatics 4.1k
0
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0
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1.5k
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Comment: Comment: How do I project known tSNE coordinates onto SeuratObject
21 months ago by benformatics 4.1k
1
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1
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1.5k
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Answer: Answer: How do I project known tSNE coordinates onto SeuratObject
21 months ago by benformatics 4.1k
0
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1
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920
views
Comment: Comment: Chance that DNA with 3N nucleotide encodes 2 protein with size of N amino-acids
21 months ago by benformatics 4.1k
490 results • Page 1 of 10
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