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0
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0
replies
356
views
Answer:
Answer: gnomad par region variants
28 days ago by
benformatics
4.2k
0
votes
1
reply
7.5k
views
Answer:
Answer: Criteria for choosing variants
7 weeks ago by
benformatics
4.2k
2
votes
0
replies
3.2k
views
Answer:
Answer: Is a direct comparison of the number of up- and down-regulated genes meaningful?
9 weeks ago by
benformatics
4.2k
1
vote
1
reply
620
views
Answer:
Answer: lifting over mitochondrial SNPs between reference genomes
3 months ago by
benformatics
4.2k
0
votes
1
reply
1.6k
views
Comment:
Comment: Inverted TSS Enrichment Plot
3 months ago by
benformatics
4.2k
0
votes
0
replies
1.6k
views
Comment:
Comment: Strandedness issues in STAR quantification
3 months ago by
benformatics
4.2k
0
votes
1
reply
1.6k
views
Comment:
Comment: Strandedness issues in STAR quantification
3 months ago by
benformatics
4.2k
0
votes
2
replies
1.6k
views
Comment:
Comment: Strandedness issues in STAR quantification
3 months ago by
benformatics
4.2k
0
votes
0
replies
1.1k
views
Comment:
Comment: Gene Exons Painter
5 months ago by
benformatics
4.2k
0
votes
0
replies
1.1k
views
Comment:
Comment: miRNA-seq normalization
7 months ago by
benformatics
4.2k
1
vote
1
reply
860
views
Answer:
Answer: SpliceAI custom gene annotation file
8 months ago by
benformatics
4.2k
2
votes
1
reply
820
views
Answer:
Answer: is there any way to normalize the counts and compare it for the splicing quantif
9 months ago by
benformatics
4.2k
0
votes
0
replies
1.2k
views
Comment:
Comment: Number of reads supporting a structural variant value in Dragen structural varia
9 months ago by
benformatics
4.2k
0
votes
1
reply
1.2k
views
Answer:
Answer: Number of reads supporting a structural variant value in Dragen structural varia
9 months ago by
benformatics
4.2k
0
votes
1
reply
960
views
Answer:
Answer: Interpret IGV
10 months ago by
benformatics
4.2k
1
vote
1
reply
1.2k
views
Comment:
Comment: heterozygous variant on the X chromosome
10 months ago by
benformatics
4.2k
1
vote
1
reply
1.2k
views
Comment:
Comment: heterozygous variant on the X chromosome
10 months ago by
benformatics
4.2k
3
votes
1
reply
1.2k
views
Answer:
Answer: heterozygous variant on the X chromosome
10 months ago by
benformatics
4.2k
1
vote
1
reply
1.2k
views
How to determine intra-run and inter-run repeatability in statistically sound manner?
Validation
updated 11 months ago by
LChart
5.1k • written 11 months ago by
benformatics
4.2k
1
vote
1
reply
2.2k
views
Comment:
Comment: HTSeq-count vs. FeatureCounts: Significant Difference in Results
12 months ago by
benformatics
4.2k
0
votes
1
reply
1.8k
views
Answer:
Answer: What is a genomic range that would almost always get decent WGS coverage but is
12 months ago by
benformatics
4.2k
0
votes
0
replies
3.9k
views
Comment:
Comment: RNA-Seq mutation calling without germline data
12 months ago by
benformatics
4.2k
1
vote
1
reply
2.2k
views
Answer:
Answer: HTSeq-count vs. FeatureCounts: Significant Difference in Results
12 months ago by
benformatics
4.2k
0
votes
0
replies
2.3k
views
Comment:
Comment: How the field has changed in the last 5 years, and 25 years (up to 2024)
12 months ago by
benformatics
4.2k
1
vote
1
reply
1.9k
views
Comment:
Comment: Problem obtaining RNA-seq counts for whole gene (intron and exon), exon only, an
13 months ago by
benformatics
4.2k
2
votes
1
reply
3.9k
views
Answer:
Answer: RNA-Seq mutation calling without germline data
13 months ago by
benformatics
4.2k
1
vote
1
reply
5.2k
views
Comment:
Comment: New Illumina error mode, new BBTools release (39.09) to deal with it
13 months ago by
benformatics
4.2k
0
votes
1
reply
6.3k
views
Comment:
Comment: NGS forensics: how to know if data is fabricated
18 months ago by
benformatics
4.2k
2
votes
0
replies
6.3k
views
Comment:
Comment: NGS forensics: how to know if data is fabricated
18 months ago by
benformatics
4.2k
2
votes
0
replies
17k
views
Answer:
Answer: How Can We Find The Info For 3'Utr And 5'Utr In Gencode Gtf File?
18 months ago by
benformatics
4.2k
1
vote
0
replies
922
views
Answer:
Answer: Exon often targeted by mobile element insertions?
20 months ago by
benformatics
4.2k
0
votes
0
replies
824
views
GATK SelectVariants --remove-unused-alternates dropping real INDELs?
GATK
23 months ago by
benformatics
4.2k
0
votes
0
replies
1.2k
views
Comment:
Comment: STAR GeneCounts for most genes are 0
23 months ago by
benformatics
4.2k
2
votes
1
reply
2.6k
views
Answer:
Answer: Paired-end RNA seq (NextSeq2000): 1-3% if R2 reads are only contain G bases
2.0 years ago by
benformatics
4.2k
0
votes
0
replies
1.2k
views
Comment:
Comment: unbiased clustering of these top 50 genes in seurat
2.0 years ago by
benformatics
4.2k
0
votes
0
replies
1.3k
views
Answer:
Answer: How to plot two categorical variables in ggridges?
2.0 years ago by
benformatics
4.2k
1
vote
0
replies
1.3k
views
Comment:
Comment: How to plot two categoric variables in ggridges?
2.0 years ago by
benformatics
4.2k
1
vote
1
reply
3.7k
views
Answer:
Answer: Map genome positions onto protein coordinates?
2.0 years ago by
benformatics
4.2k
1
vote
0
replies
1.6k
views
Answer:
Answer: Get discordant read pairs from bam
2.1 years ago by
benformatics
4.2k
1
vote
1
reply
6.1k
views
Comment:
Comment: Why should ATAC-seq mapped reads be shifted +4 and -5 for +strand and -strand, r
2.1 years ago by
benformatics
4.2k
1
vote
1
reply
3.6k
views
Answer:
Answer: Discussion: Uploading terrabytes of data to NCBI SRA
2.2 years ago by
benformatics
4.2k
1
vote
0
replies
2.4k
views
Answer:
Answer: insert size in bam file do not make sense
2.3 years ago by
benformatics
4.2k
5
votes
0
replies
2.9k
views
Answer:
Answer: How to import a gtf file in R so that it appears in tabular format as if it were
2.3 years ago by
benformatics
4.2k
1
vote
1
reply
1.1k
views
Comment:
Comment: Assigning cell types to cells based on expression of cell surface markers
2.3 years ago by
benformatics
4.2k
0
votes
0
replies
1.9k
views
Answer:
Answer: How to label clusters from a UMAP
2.3 years ago by
benformatics
4.2k
1
vote
0
replies
1.8k
views
Comment:
Comment: Identify Alternative Splicing Event using exon and junction count table
2.3 years ago by
benformatics
4.2k
0
votes
1
reply
4.6k
views
Answer:
Answer: Remove short sequences with length < 50% from a multi-fasta file
2.3 years ago by
benformatics
4.2k
1
vote
0
replies
3.5k
views
Answer:
Answer: I want to rename sequence headers
updated 2.3 years ago by
Ram
45k • written 2.3 years ago by
benformatics
4.2k
0
votes
1
reply
2.2k
views
Comment:
Comment: Contig labels in BAM off by 1, how do I fix it?
2.3 years ago by
benformatics
4.2k
1
vote
1
reply
2.2k
views
Comment:
Comment: Contig labels in BAM off by 1, how do I fix it?
2.3 years ago by
benformatics
4.2k
503 results • Page
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