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Answer: Answer: gnomad par region variants
28 days ago by benformatics 4.2k
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1
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7.5k
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Answer: Answer: Criteria for choosing variants
7 weeks ago by benformatics 4.2k
2
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3.2k
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Answer: Answer: Is a direct comparison of the number of up- and down-regulated genes meaningful?
9 weeks ago by benformatics 4.2k
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1
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620
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Answer: Answer: lifting over mitochondrial SNPs between reference genomes
3 months ago by benformatics 4.2k
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1
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1.6k
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Comment: Comment: Inverted TSS Enrichment Plot
3 months ago by benformatics 4.2k
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1.6k
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Comment: Comment: Strandedness issues in STAR quantification
3 months ago by benformatics 4.2k
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1
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1.6k
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Comment: Comment: Strandedness issues in STAR quantification
3 months ago by benformatics 4.2k
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2
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1.6k
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Comment: Comment: Strandedness issues in STAR quantification
3 months ago by benformatics 4.2k
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0
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1.1k
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Comment: Comment: Gene Exons Painter
5 months ago by benformatics 4.2k
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0
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1.1k
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Comment: Comment: miRNA-seq normalization
7 months ago by benformatics 4.2k
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1
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860
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Answer: Answer: SpliceAI custom gene annotation file
8 months ago by benformatics 4.2k
2
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1
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820
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Answer: Answer: is there any way to normalize the counts and compare it for the splicing quantif
9 months ago by benformatics 4.2k
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0
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1.2k
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Comment: Comment: Number of reads supporting a structural variant value in Dragen structural varia
9 months ago by benformatics 4.2k
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1
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1.2k
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Answer: Answer: Number of reads supporting a structural variant value in Dragen structural varia
9 months ago by benformatics 4.2k
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1
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960
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Answer: Answer: Interpret IGV
10 months ago by benformatics 4.2k
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1
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1.2k
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Comment: Comment: heterozygous variant on the X chromosome
10 months ago by benformatics 4.2k
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1
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1.2k
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Comment: Comment: heterozygous variant on the X chromosome
10 months ago by benformatics 4.2k
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1
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1.2k
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Answer: Answer: heterozygous variant on the X chromosome
10 months ago by benformatics 4.2k
1
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1
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1.2k
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How to determine intra-run and inter-run repeatability in statistically sound manner?
Validation
updated 11 months ago by 5.1k • written 11 months ago by 4.2k
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1
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2.2k
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Comment: Comment: HTSeq-count vs. FeatureCounts: Significant Difference in Results
12 months ago by benformatics 4.2k
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1
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1.8k
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Answer: Answer: What is a genomic range that would almost always get decent WGS coverage but is
12 months ago by benformatics 4.2k
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0
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3.9k
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Comment: Comment: RNA-Seq mutation calling without germline data
12 months ago by benformatics 4.2k
1
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1
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2.2k
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Answer: Answer: HTSeq-count vs. FeatureCounts: Significant Difference in Results
12 months ago by benformatics 4.2k
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0
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2.3k
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Comment: Comment: How the field has changed in the last 5 years, and 25 years (up to 2024)
12 months ago by benformatics 4.2k
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1
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1.9k
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Comment: Comment: Problem obtaining RNA-seq counts for whole gene (intron and exon), exon only, an
13 months ago by benformatics 4.2k
2
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1
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3.9k
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Answer: Answer: RNA-Seq mutation calling without germline data
13 months ago by benformatics 4.2k
1
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1
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5.2k
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Comment: Comment: New Illumina error mode, new BBTools release (39.09) to deal with it
13 months ago by benformatics 4.2k
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1
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6.3k
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Comment: Comment: NGS forensics: how to know if data is fabricated
18 months ago by benformatics 4.2k
2
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0
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6.3k
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Comment: Comment: NGS forensics: how to know if data is fabricated
18 months ago by benformatics 4.2k
2
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0
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17k
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Answer: Answer: How Can We Find The Info For 3'Utr And 5'Utr In Gencode Gtf File?
18 months ago by benformatics 4.2k
1
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0
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922
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Answer: Answer: Exon often targeted by mobile element insertions?
20 months ago by benformatics 4.2k
0
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0
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824
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GATK SelectVariants --remove-unused-alternates dropping real INDELs?
GATK
23 months ago by benformatics 4.2k
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0
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1.2k
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Comment: Comment: STAR GeneCounts for most genes are 0
23 months ago by benformatics 4.2k
2
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1
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2.6k
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Answer: Answer: Paired-end RNA seq (NextSeq2000): 1-3% if R2 reads are only contain G bases
2.0 years ago by benformatics 4.2k
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0
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1.2k
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Comment: Comment: unbiased clustering of these top 50 genes in seurat
2.0 years ago by benformatics 4.2k
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0
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1.3k
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Answer: Answer: How to plot two categorical variables in ggridges?
2.0 years ago by benformatics 4.2k
1
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0
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1.3k
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Comment: Comment: How to plot two categoric variables in ggridges?
2.0 years ago by benformatics 4.2k
1
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1
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3.7k
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Answer: Answer: Map genome positions onto protein coordinates?
2.0 years ago by benformatics 4.2k
1
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0
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1.6k
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Answer: Answer: Get discordant read pairs from bam
2.1 years ago by benformatics 4.2k
1
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1
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6.1k
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Comment: Comment: Why should ATAC-seq mapped reads be shifted +4 and -5 for +strand and -strand, r
2.1 years ago by benformatics 4.2k
1
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1
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3.6k
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Answer: Answer: Discussion: Uploading terrabytes of data to NCBI SRA
2.2 years ago by benformatics 4.2k
1
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0
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2.4k
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Answer: Answer: insert size in bam file do not make sense
2.3 years ago by benformatics 4.2k
5
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0
replies
2.9k
views
Answer: Answer: How to import a gtf file in R so that it appears in tabular format as if it were
2.3 years ago by benformatics 4.2k
1
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1
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1.1k
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Comment: Comment: Assigning cell types to cells based on expression of cell surface markers
2.3 years ago by benformatics 4.2k
0
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0
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1.9k
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Answer: Answer: How to label clusters from a UMAP
2.3 years ago by benformatics 4.2k
1
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0
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1.8k
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Comment: Comment: Identify Alternative Splicing Event using exon and junction count table
2.3 years ago by benformatics 4.2k
0
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1
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4.6k
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Answer: Answer: Remove short sequences with length < 50% from a multi-fasta file
2.3 years ago by benformatics 4.2k
1
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0
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3.5k
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Answer: Answer: I want to rename sequence headers
updated 2.3 years ago by 45k • written 2.3 years ago by 4.2k
0
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1
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2.2k
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Comment: Comment: Contig labels in BAM off by 1, how do I fix it?
2.3 years ago by benformatics 4.2k
1
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1
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2.2k
views
Comment: Comment: Contig labels in BAM off by 1, how do I fix it?
2.3 years ago by benformatics 4.2k
503 results • Page 1 of 11
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