Entering edit mode
9.9 years ago
John Smith
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320
I am new to bioinformatics and I am currently learning how to use software that generates artificial FASTQ files from a given reference genome. In the manual appears the following:
On an Intel Xeon X5650 processor (12M cache, 2.66 GHz, 6.40GT/s Intel QPI), when using real quality scores and simulating sequencing errors, and with the other parameters set to their defaults (see Section 2), it takes about 6 hrs 20 mins to process 1 Gbase.
What exactly is a Gbase in this context?
Thank you. I thought that might be it but was not entirely sure.
I'm just glad we're counting in a decimal system.