Is There Any Tool Available To Convert Vcf Format To Gatk Verbose Type Format?
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12.8 years ago
Prateek ★ 1.0k

Do you know of any tool that can convert VCF format for variant calls to GATK verbose style format (Start and stop coordinates with insertion or deletion prefixed by + or -) which is easier to read for indels.

VCF:            
---
1     978603  .       CCT     C

GATK Verbose:
--------
1     978603     978605    -CT

Thanks

vcf variant gatk format conversion • 3.1k views
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12.8 years ago
Swbarnes2 ★ 1.6k

Annovar converts vcf's to something that looks a lot like that. You could try that.

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