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13.0 years ago
Prateek
★
1.0k
Do you know of any tool that can convert VCF format for variant calls to GATK verbose style format (Start and stop coordinates with insertion or deletion prefixed by + or -) which is easier to read for indels.
VCF:
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1 978603 . CCT C
GATK Verbose:
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1 978603 978605 -CT
Thanks
GATK VariantAnnotator? http://www.broadinstitute.org/gsa/wiki/index.php/VariantAnnotator