Have anyone experienced CREST tools?

Question

[mangfu100]

Hi

I am using CREST software tool to detect structural variants with my exome sequencing data.

Anyway I am running CREST perl script and waiting for output results.

But It seemed to take a long to finish its process. So I split my exome data into chromosome part and

run in parallel. but also this seems to take a long.

any my display shows below message continuously.

Output is in /tmp/qYhU5HK0bU/_QNSskCB3G.fa.clip.fa.psl
chr7    12673899        -       1
Output is in /tmp/qYhU5HK0bU/_1CZHuhfRs.fa.clip.fa.psl
chr7    12673876        +       2
Output is in /tmp/qYhU5HK0bU/QDFsl0BzT9.fa.cap.contigs.clip.fa.psl
chr7    12675024        -       2
Output is in /tmp/qYhU5HK0bU/ZgDeHnrkRB.fa.cap.contigs.clip.fa.psl
chr7    12675068        +       1
Output is in /tmp/qYhU5HK0bU/tw1F0SgTrq.fa.clip.fa.psl
chr7    12678709        +       1
Output is in /tmp/qYhU5HK0bU/rUJzb3qTAI.fa.clip.fa.psl
chr7    12682197        -       1
Output is in /tmp/qYhU5HK0bU/gA44S7K9Te.fa.clip.fa.psl
chr7    12688018        +       1
Output is in /tmp/qYhU5HK0bU/Zv9EUcaF8k.fa.clip.fa.psl
chr7    12687946        -       1
Output is in /tmp/qYhU5HK0bU/4tR5yQ479Z.fa.clip.fa.psl
chr7    12692496        -       1
Output is in /tmp/qYhU5HK0bU/3D1Zcgfinb.fa.clip.fa.psl
chr7   12692561        +       1
Output is in /tmp/qYhU5HK0bU/yME7gmQvmP.fa.clip.fa.psl*

Above message is still chr7 considering there are 22 chromosomes, i think it will take very long time to finish.

So am i doing in a wrong way? or it this right situation?

I just followed everything indicated in README.

I am appreciated if you give me any advice.

Thank you.

[sbogen]

I am having the same issue. It has been several days, and I am wondering if something is wrong.

How did things turn out for you?

[mangfu100]

Did you use exome sequencing data?