Question

CREST (Clipping Reveals Structure) runtime

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11.0 years ago

sbogen • 0

Hello all,

I am just wondering whether anybody has run the CREST pipeline successfully. How long did it take? I am running the pipeline with a full C. elegans genome and I started it almost a week ago. Is this normal or could it be reflective of a problem?

Thank you!

crest • 3.0k views

ADD COMMENT • link updated 3.7 years ago by Ram 45k • written 11.0 years ago by sbogen • 0

Ram · Answer 1 · 2014-11-19

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11.0 years ago

Matt Shirley 10k

I know that one of the analysts in our group ran CREST on a human sample and reported that the runtime was ~1 month. Good luck!

ADD COMMENT • link updated 3.7 years ago by Ram 45k • written 11.0 years ago by Matt Shirley 10k

Ram · Answer 2 · 2014-11-19

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11.0 years ago

Zev.Kronenberg 12k

Let me propose an alternative method: https://github.com/jewmanchue/wham

We are in the process of writing it up.

ADD COMMENT • link updated 3.7 years ago by Ram 45k • written 11.0 years ago by Zev.Kronenberg 12k