Welcome to Biostar!
Add New Post
which software/program is suitable for visualization of PHASE out put files?
5.5 years ago by
which software/program is suitable for visualization of haplotypes generated by PHASE program?
• 1.3k views
Follow via messages
Follow via email
Do not follow
5.5 years ago
to add an answer.
Similar posts •
How To Visualise The Flow Of Genotypes/Haplotypes Through The Pedigree?
Hi can any one recommend any software for working with phased VCF files? I've a complete 4 gener...
Calculating association with outcome variable and Phased Haplotypes
I am trying to determine association between a set of haplotypes (2 or 3 marker SNPs) with a clin...
Which software can be used to visualize phylogenetic trees with a large number of OTUs (e.g. 50,000)
I am wanting to visualize a tree with more than 50,000 OTUs and save it as an image. Which softwa...
Phases switches in local ancestry inference (LAMP-LD vs RFMix)
Hello. I am working on the revision of a manuscript were we used LAMP-LD software to infer local ...
Speed up PHASE software for haplotype inference
I am a Bioinformatician and recently stuck in a problem which requires some scripting to speed up...
HAPLOTYPES SOFTWARES interpretation
Hello, i used two softwares to analyze haplotypes ; haploview and phase . I found positif results...
Is there a way to phase an unphased data for selection detection?
Hi! I have ped/map file containing two populations (~110 samples, ~500k SNPs). Is there a softwa...
Which software is suitable for protein prediction from whole eukaryotic genomes?
Hello, I want to try programms for Orthologous prediction (OrthoMCL for example), the programs w...
From PHASE to HaploView
I finally built a PHASE input file (.inp) and my analysis was executed successfully. Now I have ...
LD pruning before or after phasing for calculating site frequency spectrum?
I want to calculate the joint-site frequency spectrum (SFS) of 3 populations from phased genotype...
Mapping /Need software
Hi, I want to do mapping of my trimmed RNA seq reads with gallus gallus reference gene.I have s...
Ligand topology with gromacs
I have to simulate a big complex with two different proteins, GNP ligand and acetate(ACT), MG and...
Browser to display sequence searches in BAM files
I have a large BAM file containing reads from a single human genome. I'd like a visual map of the...
Hi Biostar community, I have human SNP phased data and I need to find haplogroups, which program ...
Can Read Back Phased genotypes be used to extend the haplotype blocks with Beagle, Shapeit, FastPhase etc?
I have read back phased vcf files from several individuals. So there are several haplotype block...
Is it acceptable to use ShapeIT for parasite genomes?
Dear all, I am posting this question to BioStars community as I am trying to get a consensus on ...
Clustering Of Ncrna
I want to cluster a set of ncRNAs in human into different families based on sequence similarity. ...
Use of this site constitutes acceptance of our
Traffic: 791 users visited in the last hour