How to detect and modify ambiguous alignment regions?
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9.1 years ago
abysmo • 0

I've aligned sequences of 49 nuclear genes separately with PRANK.What should I do before concatenating the alignments into a dataset for further analysis(building phylogenetic trees with ML and BI methods)?How to detect and modify the ambiguous regions in the alignments?Are there any software for this?

alignment • 2.3k views
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