Question: Where Can I Find The Old Tigr Ids?
2
gravatar for K. Wyatt Mcmahon
7.3 years ago by
Virginia Bioinformatics Institute, Virginia Tech
K. Wyatt Mcmahon50 wrote:

I'm doing an analysis for a client and he's given me a microarray intensities file with Probe ID and "Systematic Name" (Agilent's transcript ID denotation).

Many of the Systematic Names are familiar (ENS for Ensembl, NM for RefSeq). But many of them begin with TC: TC460338, TC480486, etc.. I think this is an old TIGR transcript ID, but I'm not sure. Can someone verify this for me? Where can I find a list of these IDs? A Google search turns up nothing, as does a search of http://www.jcvi.org/.

Thanks in advance!

Wyatt

identifiers • 1.6k views
ADD COMMENTlink written 7.3 years ago by K. Wyatt Mcmahon50
6
gravatar for Haibao Tang
7.3 years ago by
Haibao Tang3.0k
Mountain View, CA
Haibao Tang3.0k wrote:

They appear to be IDs for transcript assembly (merged ESTs or unigenes). The resources were originally developed at TIGR (now JCVI), but has moved to The Gene Index Project later. Check to see if the site curates your organism of interest.

ADD COMMENTlink written 7.3 years ago by Haibao Tang3.0k

Thanks so much, Haibo! That's exactly what I needed to know!!

ADD REPLYlink written 7.3 years ago by K. Wyatt Mcmahon50
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