Question: Deseq Table Of Contents
0
gravatar for Rose Adele
8.7 years ago by
Rose Adele0
Rose Adele0 wrote:

I have my RNA Seq data in a excell table, one column for the name of the gene, and two conditions columns containing the number of reads. What can I do to use this table in the DESeq? Thanks a lot for your help. Rose

• 1.8k views
ADD COMMENTlink written 8.7 years ago by Rose Adele0
1
gravatar for Curiosity
8.7 years ago by
Curiosity10
Curiosity10 wrote:

Follow the manual www-huber.embl.de/users/anders/DESeq/ Every thing is there. It should be like this. You need to put an header. S1 is the number of reads in sample overlapping with Sox2 gene and vice versa. You can get the reads by using coverageBED command in BEDTools.

gene  S1  S2
Sox2  24  450
ADD COMMENTlink written 8.7 years ago by Curiosity10
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1731 users visited in the last hour