KCF to RXN in Xemistry Cactvs

Question

[lemmer.elassal]

Hi everybody,

I tried getting Xemistry Cactvs working to get the manual curated reaction files as rxn but the command in the documentation isn't working.

set xhandle [reaction create KEGG:RP09586]

Neither is this: KEGG rPair mapping to molfile

molfile write RP00079.rxn [reaction create KEGG:RP00079]

Any help is greatly appreciated.

Thank you
Lemmer

Answer 1

[wdiwdi]

I just tried, and it worked for me. Which release are you using, and on what platform? Do you have any firewalls which block port 80 Internet communication (possibly with the exception of specific applications such as Web browsers)? Did you check whether this was a temporary outage at KEGG?

Answer 2

[lemmer.elassal]

Issue resolved, I had been using the Win32 version which is over a year old, but with the Linux version (Suse11), it works

All you have to do is install as root, then execute csts+, then write the molfile
Thank you very much wdiwdi!