Ancestral sequence reconstruction and indels
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8.7 years ago
morningtea • 0

Is it the case that the Felsenstein method doesn't handle indels ? In which case, what methods do ?

Also, where does one get appropriate substition matrices for use in the Felsenstein method ? They should be a function of branch length, but what function of branch length ?

phylogenies ancestral sequences • 1.2k views
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