Question: Fire-Pro Gene Expression Profile
1
gravatar for Dhillonv10
7.9 years ago by
Dhillonv10100
Dhillonv10100 wrote:

I'm trying to use Fire-pro to find motifs in linear motifs taken from ELM database. However, using the software, the syntax comes as follows:

perl $FIREPRODIR/fire_aa_wrapper.pl --expfile=<inp> --exptype=<type> --species=<sp>  --runname=<dir/prefix>

where inp indicates the input expression profile. Now for any given linear motif, say for instance we take the MOD_SUMO identifier and one can download all the instances of it from ELM. So then when you have a fasta file with all the sequences, each containing the motif, how would one go about running fire-pro against it? To be able to run firepro one first needs the input expression profile, where can I find it? Thanks!

software perl motif • 1.4k views
ADD COMMENTlink written 7.9 years ago by Dhillonv10100
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