Question: Merging SNPs from multiple imputation runs
gravatar for lkmklsmn
5.2 years ago by
United States
lkmklsmn930 wrote:


I have imputed genotypes surrounding a number of genes using IMPUTE2. Some of these genomic regions overlap so that I end up imputing a given SNP multiple times. Is there a nice and easy way to merge these files into a single one (preferably vcf format)? In particular, I want to merge genotype if the imputations agreed and somehow mark genotype if the imputations disagreed. Is that possible?

vcftools imputation impute2 • 1.9k views
ADD COMMENTlink written 5.2 years ago by lkmklsmn930
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1997 users visited in the last hour