Question: Variant Calling accounting for ALT contigs
2
gravatar for Benilton Carvalho
5.1 years ago by
Brazil
Benilton Carvalho20 wrote:

Hi,

On the subject on variant calling, are you guys doing anything to account for alt contigs described on GRCh38? Although bwa is ALT-aware, it seems to me that the callers aren't. Maybe I'm missing something?

Thank you very much,

ADD COMMENTlink modified 5.1 years ago by Biostar ♦♦ 20 • written 5.1 years ago by Benilton Carvalho20
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