Question: Error while assembling genome with ABySS at strand specific mode
gravatar for jakalssj3
5.0 years ago by
jakalssj380 wrote:

Hi all,

I'm trying to generate an assembly using a strand specific library. Each time I execute abyss-pe with "SS=--SS" option, I get a core dump. Without this option, the assembly process runs without any problems. It's definitely not an issue of RAM, since I'm using a machine with 2TB of memory. The process stops at "Eroding tips" stage and the message in stderr is: make: *** [output.k65-1.fa] abort (core dumped)". Any clue what could be wrong?

abyss assembly • 1.4k views
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