COSMIC vcf file contains "N" & "." characters in ALT column

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10.2 years ago

vdtbioinfo • 0

Hi,

I am using COSMIC hg19 vcf file to make hotspot bed file but in ALT column of COSMIC vcf contains N & . characters so software I am using ignores that COSMIC ID while making hotspot bed file. It will be great if anybody could help me.

vcf hotspot-bed cosmic-database • 2.0k views

ADD COMMENT • link updated 3.1 years ago by Ram 45k • written 10.2 years ago by vdtbioinfo • 0

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What software are you using to convert VCF to BED?

ADD REPLY • link updated 3.1 years ago by Ram 45k • written 10.2 years ago by Sean Davis 27k

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