How to locate the intergeneic SNPs in cis-regulatory element

Question

[gzr3150]

Hi, I am a beginner in genome field and I hope some teachers can give me a guidence.

Now, for example, I have some SNPs in a whole novel genome, and I have genome sequence (fasta) and SNP resequencing data. I want to know whether they are in cis-regulatory element or not ? Do anyone know what softwares or approaches can do this ? Or are there any softwares can predict the cis-regulatory element position from a novel genome sequence (fasta) ? Thanks a lot.