validation data sets to benchmark somatic variant callers
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10.1 years ago
severine ▴ 10

Hi

Would appreciate guidelines on where to find recent, well-accepted and preferably publicly available validation datasets to benchmark both the sensitivity and specificity of somatic variant callers.

Also are the validation datasets different when testing tumor-only sample variant calling versus matched normal-tumor pair?

Thanks
Severine

somatic-variant-calling validation • 2.4k views
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