Creating a Genepop file from multiple VCF files
0
0
Entering edit mode
5.9 years ago
lifatrahi • 0

I have merged VCF files of every individuals of a particular population using VCF merge. But I am not sure which SNP is coming from which individual. I tried to convert the merged VCF file in PGDSpider to generate GENEPOP format data to use in Lositan for Outlier detection. However, Lositan only detects one population. What could be the best way to merge different VCF files for different populations into one Genepop file to use in Lositan for Outlier detection?

Thank you in advance,

Lifat

vcf genepop PGDSpider Lositan BayeScan • 3.1k views
ADD COMMENT

Login before adding your answer.

Traffic: 2293 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6