Question: creation of custom database in ANNOVAR for plant genome
2
gravatar for Sathish
3.4 years ago by
Sathish60
India
Sathish60 wrote:

Hi everyone,

How to create a custom database in ANNOVAR for plant genome (draft genome) using GFF3 file?

I have downloaded corresponding genomic sequences and their gff3 file. Then gff3 file was used to annovar readable format by using the following command.

$ gff3ToGenePred pgonome.gff3 pgenome

Any body could post the steps to proceed next step..

Note: I have a VCF file with detected number of SNP's.

genome snp gff3 annovar vcf • 1.4k views
ADD COMMENTlink modified 3.4 years ago by Biostar ♦♦ 20 • written 3.4 years ago by Sathish60
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