Now I want to extract fasta file from LTR-finder output , while I have poor program knowledge, and don't know how to do it. So I want to ask if anyone can provide me an available script or method to do this. Thanks!
Have you found a solution? if so, please share. Same question here.
First use cnv_ltrfinder2gff.pl to convert the output to gff format, then use bedtools getfasta to convert gff to a fasta list.
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