Script convert ltr_finder output file to fasta format
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5.9 years ago
Ginsea Chen ▴ 130

Dear all

Now I want to extract fasta file from LTR-finder output , while I have poor program knowledge, and don't know how to do it. So I want to ask if anyone can provide me an available script or method to do this. Thanks!

script ltr_finder fasta • 1.9k views
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Have you found a solution? if so, please share. Same question here.

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3.9 years ago
TWV ▴ 90

First use cnv_ltrfinder2gff.pl to convert the output to gff format, then use bedtools getfasta to convert gff to a fasta list.

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