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• LRR and BAF calculate
  how can i calculate LRR and BAF for Illumina SNP arrays?i m trying to work on snp chip data
• SNP Array data with 0 copies for a segment
  Hello, I am working with SNP array data and would like to know what I should expect to see when ...
• Converting to GDS format
  I'm trying to create nice looking LRR and BAF plots for some SNP array data that I have. I was ho...
• How to convert BAF to SNP genotype A/B
  I have a file with the LRR (Log R Ratio) and BAF (B allele frequency) for each sample and each SN...
• Deriving Illumina genotypes from LRR and BAF data
  Hi all. Anyone knows a robust method to obtain genotypes from Illumina LRR and BAF data? Any poin...
• converting Affymetrix SNP 'intensity' data to LRR/BAF data
  Hi all, I am working on a big dataset that used Affymetrix platform for SNP genotyping. I have n...
• Cnv Calling In A Region With Homozygous Snps
  I genotyped 100 samples for CNVs with Taqman Assays and found 6 samples with a heterozygous dupli...
• Calling copy number from SNP arrays
  I have log R ratios and beta allele frequencies from Affy6 data. I've used the LRR with the R pac...
• get B allele frequency (BAF) and lor R ratio (LRR) in LINUX
  Dear all, I know I can obtain the BAF and LRR from raw data on Illumina GenomeStudio software, b...
• CNV , make GCtype. LRR. BAF files , again
  Hi I have three files from a company with following names GCtype, LRR and BAF. But I need to qua...
• Calculate LogR ratio and BAF from X and Y intensities
  Hi, Does any one have a recommendation of a method or a program to convert X and Y intensities f...
• How to Convert Illumina reports to Vcf files?
  Hi All, I am new to CNV analysis and Vcf file conversion. I have an Illumina text report and I ...
• Analysis of BAF from SNP array data
  Hi guys, I have a question about the BAF pattern I see when looking at SNP array data. I recently...
• Atypical BAF profile in duplication
  Hello everyone ! I'm using SNP array and I recently got a weird profile : we have a duplication ...
• How To Call Cnvs From Raw Intensities
  Dear all, Does anyone have any methods for calling CNVs and/or obtaining LRR/BAF from raw intens...
• Preprocess Illumina Hiseq Exome for ASCAT
  I'm trying to use ASCAT to assess CNV from Illumina Hiseq whole exome data. Don't have reliable ...
• Is It Possible To Convert Illumina Genotype Data Into Affymetrix-Like Format?
  I realized that there are many tools only support Affymetrix SNP array data analysis. Is there an...
• Obtaining LRR and BAF values from affymetrix SNP array
  I am trying to extract the `LRR` and `BAF` values from an affymetrix SNP chip without success usi...