Quality Scores 454
1
0
Entering edit mode
9.7 years ago
Bdv • 0

Hi why is the quality score for raw data and for assembled contigs is different? both are phred like? id fo, why the maximum is 64 in assembly and 40 un raw data? thanks!

quality scoring assembly • 2.3k views
ADD COMMENT
3
Entering edit mode
9.7 years ago
lexnederbragt ★ 1.3k

Yes, both are phred-based. Contigs have a higher maximum quality score than reads, as the contigs are based on several overlapping reads, allowing for more confident basecalls.

ADD COMMENT

Login before adding your answer.

Traffic: 1380 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6