Question: Use BioprojectID form an Excel file to do an alignment between the corresponding sequence and 5 other sequences separately. Obtain importante informations from this and repeat this for 5000sequences
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gravatar for chups519
3.7 years ago by
chups51910
chups51910 wrote:

Hey

I'm in a project where i have to use a Bioproject ID from an Excel file and with the corresponding sequence (written with amino acids instead of nucleotides) compare it with another 5 sequences (multiple alignment, that you can do manually with this data base http://blast.ncbi.nlm.nih.gov/Blast.cgi?PROGRAM=blastp&PAGE_TYPE=BlastSearch&LINK_LOC=blasthome) From here i have to pick up useful information such as 'description', 'e-value' and 'accession number' and put it in an another Excel file.

I just start learning how to program because i never had to program before this project and i'm a bit lost here. Can any of you guys help me with this please? Notice that i have to create a script able to do this for 5000 diferente Bioproject ID's and can't do any of this steps by hand.

Even if you can't help me with i thank you right now for your attention

sequencing blast genome gene • 1.0k views
ADD COMMENTlink written 3.7 years ago by chups51910
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