Question: Finding Motif Representation Of A Given Secondary Structure Of Rna Sequence
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gravatar for Cinita Mary Mathew
8.4 years ago by
Cinita Mary Mathew0 wrote:

Name of any site or tool where i can get the motif representation if i give secondary structure of RNA Sequence

• 2.0k views
ADD COMMENTlink written 8.4 years ago by Cinita Mary Mathew0

You need to clarify. Motif representations are usually summaries -- do you have >1 RNA secondary structure and you want to find the common elements?

ADD REPLYlink written 8.4 years ago by Qdjm1.9k
3
gravatar for Peter Kovac
8.4 years ago by
Peter Kovac70
Bratislava, Slovakia
Peter Kovac70 wrote:

Our lab has developed RNArobo, maybe it can help you.

RNArobo is an RNA structural motif search tool. RNArobo can search sequence databases in FASTA format for a motif defined by a descriptor, which can specify primary and secondary structure constraints. ... RNArobo enables you to allow nucleotide insertions in a structural element.

ADD COMMENTlink written 8.4 years ago by Peter Kovac70
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