Question: Are all CNAs of HCC1153 cell line reported by COSMIC somatic mutations?
gravatar for lyz10302012
3.6 years ago by
lyz10302012330 wrote:

I am using HCC1153 and HCC1954 from TCGA Mutation/Variation Calling Benchmark 4 for benchmarking SCNA calling. However, I found some SCNAs reported by COSMIC are germline CNVs (both tumor and normal sample has 0 copy (no reads) by viewing bams with IGV). Can anyone tell me how can I find the ground truth set of SCNAs for these two samples?

tcga benchmark 4 • 860 views
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