Question: Are all CNAs of HCC1153 cell line reported by COSMIC somatic mutations?
0
gravatar for lyz10302012
3.1 years ago by
lyz10302012330
China
lyz10302012330 wrote:

I am using HCC1153 and HCC1954 from TCGA Mutation/Variation Calling Benchmark 4 for benchmarking SCNA calling. However, I found some SCNAs reported by COSMIC are germline CNVs (both tumor and normal sample has 0 copy (no reads) by viewing bams with IGV). Can anyone tell me how can I find the ground truth set of SCNAs for these two samples?

tcga benchmark 4 • 769 views
ADD COMMENTlink written 3.1 years ago by lyz10302012330
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 715 users visited in the last hour