Question: Is a vcf file necessary in IndelRealigner if we already used it to make intervals?
0
gravatar for anp375
3.6 years ago by
anp375160
anp375160 wrote:

I already used two vcf files to make intervals with RealignerTargetCreator. Do I really have to pass them in again to IndelRealigner or is it just an option to look at extra spots?

ADD COMMENTlink modified 3.6 years ago by mastal5112.0k • written 3.6 years ago by anp375160
1
gravatar for mastal511
3.6 years ago by
mastal5112.0k
mastal5112.0k wrote:

It will probably throw an error if you don't pass them in again, as well as the intervals file.

ADD COMMENTlink written 3.6 years ago by mastal5112.0k
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