Proteins types used in ENCODE

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8.1 years ago

Tobias ▴ 150

Currently, for a new paper I want to illustrate the different types of proteins I do have data for from the ENCODE consortium. So I want to term one group as transciription factors (TF), another group as coregulators and a third group as chromatin remodellers (CM). Sadly, I found no such classification on www.encodeproject.org.

If you could help me here and provide me with such a list, I would be very delighted.

Many thanks for your help in advance!

ChIP-Seq ENCODE • 1.1k views

ADD COMMENT • link updated 8.0 years ago by Biostar 20 • written 8.1 years ago by Tobias ▴ 150

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hi, I am not sure about 'coregulators', but there is a very good resource @ the Broad website: MSigDb. Its a compendium of GO, KEGG, Reactome and additional computational classification of gene functional families. Searching a particular function will pull out related pathways which then list the constituent genes. Might help your case. Another resource is HGNC gene families page.

ADD REPLY • link 8.1 years ago by Amitm ★ 2.2k

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