Alternate of WEGO (Web Gene Ontology Annotation Plotting)

Question

[Rajesh Detroja]

Dear All,

If there is any alternate of WEGO that will give Graphical Plotting of Gene Ontology like WEGO please let me know.

WEGO is good, but i have more that 100,000 genes in WEGO format file, which is limitation of WEGO and giving error like,

  #0: File File1_WEGO.txt contains genes sum larger than 100,000!
  #1: File File2_WEGO.txt contains genes sum larger than 100,000!

[y.wang]

Hey Rajesh, Could you tell me how to prepare the input files for wego and how to start with wego? Thanks so much in advance! Yanting

Answer 1

[Rajesh Detroja]

Finally I have did is by using WEGO it self by editing WEGO file. I have removed those genes IDs which are not assigned by GO Terms so now remaining IDs is under the limitation (100,000) of WEGO.