Question: Can TCGA miRNAseq data be realigned to more current version of miRBase?
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gravatar for aschan416
2.9 years ago by
aschan4160
aschan4160 wrote:

I have 2 novel miRNAs in my dataset, performed using the Agilent miRNA microarray platform with miRbase 19. I want to validate the expression of these miRNAs in the TCGA data. However, the TCGA miRNAseq data was alignment was done using miRBase 16. The two miRNAs I want to verify are in miRBase version 19 but not in version 16. Is there a way to realign the TCGA data to retrieve this information? What would be the pipeline for doing this, as I have never processed miRNAseq data before?

mirnaseq tcga • 810 views
ADD COMMENTlink written 2.9 years ago by aschan4160
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