working on a personal project I've recently obtained the accession to a server in order to run Multiple Structural Alignment process on it instead of using my pc that I require for studying (I'm a student).
So, I use MUSTANG to compute the multiple structural alignment over a set of PDB files.
I run mustang with the following command on a Screen form the directory where I've got all the PDB file (Edited and so with just one chain) and the file that list path and pdb id :
mustang -f ListPdbMust21.txt -F ‘fasta’ -r ‘ON’ 2> Output_Error.txt ; echo ‘Must END’ | mail -s ‘PROJECT NOTIFICATION’ My_Email@domain.it
Checking the process on the screen the parsing procedure seems to be concluded fine and the computation of the pairwise alignment too. Redirecting the stderr to the Output_Error.txt didn't produce anything.
In spite of this no output files are produced by mustang.
Now I'm quite confused.. Do I miss something about how mustang works on server? There is nothing about it on the mustang manual.