Question: Merge gtf file by coordinates
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gravatar for melissa.ilsley
2.3 years ago by
melissa.ilsley20 wrote:

I want to merge 2 gtf files in the same way that bedtools merge would do so. so that each overlapping region indicated by the coordinates are combined, but keeps that rest of the information in the gtf. Is there a programme that does this?

merge gtf • 1.1k views
ADD COMMENTlink modified 2.3 years ago by reza.jabal280 • written 2.3 years ago by melissa.ilsley20

I guess that bedtools merge can handle gtf files.

ADD REPLYlink written 2.3 years ago by iraun3.4k
0
gravatar for reza.jabal
2.3 years ago by
reza.jabal280
United Kingdom
reza.jabal280 wrote:

You can easily do this in awk. Read this: http://unix.stackexchange.com/questions/88550/vlookup-function-in-unix

ADD COMMENTlink written 2.3 years ago by reza.jabal280
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