Question: (Closed) Which Phylogeny Software Should I Used To View Tree Of 5000 Sequences?
0
gravatar for Sagar Nikam
6.3 years ago by
Sagar Nikam160
Pune, India
Sagar Nikam160 wrote:

Possible Duplicate:
What is a good phylogenetic tree display program for large data sets?

i have around 5000 protein sequences,i have .nw(Newick format) file, which generats phylogenetic tree, which graphical softwares should i used?that gives me HD trees i tried MEGA,FigTree softwares,but they hang many times

software phylogenetics • 2.2k views
ADD COMMENTlink modified 6.3 years ago by Niek De Klein2.4k • written 6.3 years ago by Sagar Nikam160

Niek's answer is good (and suggests we should close this as a duplicate).

ADD REPLYlink written 6.3 years ago by Neilfws48k

Hello ,Sagarnidam123! I happened to see your question here.Could you tell me which aligment tool did you choose to align such a lot of suqeuences ? I also have a large amont of sequences need to be aligned , I tried clustalw and clustal-omega, but it seems that the software can not handle so many suquences and comes to an termination .Thanks a lot!

ADD REPLYlink modified 3.3 years ago • written 3.3 years ago by crystalrose30
3
gravatar for Niek De Klein
6.3 years ago by
Niek De Klein2.4k
Netherlands
Niek De Klein2.4k wrote:

I personally like http://itol.embl.de/, it can easily handle that data (has a 10.000 sequences limit) and it is very nice to view. Takes a bit of time to figure out how to get the colors going for great viewing, but that's totally worth it.

However, many more very good viewers were suggested on my question here, and for huge tree viewers here.

ADD COMMENTlink written 6.3 years ago by Niek De Klein2.4k
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