Question: Error in retrieving SupportFiles from GEO
0
gravatar for 786
3.0 years ago by
78650
78650 wrote:

Hi I'm trying to get data from GEO through R but facing certain problem. Please help to get out of it...

> Study2 = "GSE55650"
> Gse55650dat = getGEO('GSE55650')
Found 1 file(s)
GSE55650_series_matrix.txt.gz
trying URL 'ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/SeriesMatrix/GSE55650/GSE55650_series_matrix.txt.gz'
ftp data connection made, file length 5499033 bytes
opened URL
downloaded 5.2 Mb

But I got error here...

> Gse55650raw= getGEOSuppFiles(study2)
Error in substr(GEO, 1, 3) : object 'study2' not found

What does it mean?Can anyone please help me out in understanding it??

geo2r geoquery R geo • 932 views
ADD COMMENTlink modified 18 months ago by Sean Davis25k • written 3.0 years ago by 78650
0
gravatar for Sean Davis
18 months ago by
Sean Davis25k
National Institutes of Health, Bethesda, MD
Sean Davis25k wrote:

Late reply.

Your variable is called Study2, not study2. Note the capitalization.

ADD COMMENTlink written 18 months ago by Sean Davis25k
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