Motifs data base
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6.7 years ago
Ati ▴ 40

I have found some motifs using DREME. Is there any database to check whether these motifs report before in specific sequence or region?

Thanks

RNA-Seq Motifs DNA DREME • 1.6k views
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6.7 years ago
Girolamo ▴ 140

if the motifs are binding sites for RNA binding proteins i would suggest ATtRACT because is more updated, it contains more motifs, and all of them experimentally validated http://attract.cnic.es/ if you are interested: paper

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Thanks a lot for your information

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6.7 years ago
UnivStudent ▴ 430

If they're RNA motifs try the motif scan in CIS-BP-RNA to find related motifs from RNA-binding proteins using Tomtom. If they're DNA try the motif scan in CIS-BP to find related motifs from TFs using Tomtom.

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Thanks a lot for your information

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